Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00161 ATGACAACCGGAGGAGGAGGAAGCGGCGGCGGCTCCGCAGTGGGAGTCCAGATCCAGCAGCAGAGCCGAATGGCGCTCCCCGATTTCCTCCAGAGCGTCAATCTCAAGTACGTCAAATTAGGTTACCACTACTTGATCTCCAACCTCTTAACCCTTTTTCTAGTTCCTTTGATCCTCGTCACGCTAATCCAGGTCTCCCAAACCACCGACCTCCACCACCTCTGGCTCCACCTCCAGTACAACCTCCTCACCATCCTTACCTGCTCCGCCGTCCTCGTCTTCGGCCTCACGCTTTACGCCGTCACGCGCCCACGCGCCGTCTACCTCCTGGACTCCGCCTGCTTCCGCCCCGCCGAGCATCTCAAAGCCCCCTTCCGGAGTTTCATGGACCATTCCCGCCTCACGGGAGACTTCGAGGAGTCGTCCCTGGATTTCCAGCGCAAGATCCTGGAACGTTCTGGTCTCGGGGAGGAGACCTACGTCCCCGAGGCCATGCACTCTATTCCGCCGCAGCCGTCCATGGCTGCGGCCAGAGCGGAGGCGGAACAAGTCATGTTTGGTGCCTTGGATAATCTCTTCCACAACACTAGCCTTAAGCCTAAGGATATTGGTATTCTTATTGTGAATTGTAGCTTGTTTAACCCTACGCCCTCACTCTCTGCCATGATTGTTAATAAGTACAAATTGAGAGGGAACATTAGGAGCTTTAATTTGGGAGGGATGGGGTGCAGTGCTGGGGTTATTGCGGTCGATCTTGCCAAGGACCTTTTGCAGGTTCATAGGAACACGTATGCCGTGGTTGTTAGCACTGAGAACATTACTCAGAATTGGTACTTTGGGAACAAGAAATCCATGCTCATTCCCAATTGCCTCTTCCGGGTCGGCTGTTCCGCGTTGCTGCTGTCCAACAAGCCGGCCGATCGGAGGCGGGCCAAGTACCGGCTTGTGCATGTTGTGAGGACTCATCGCGGTGCTGATGACAAGGCGTTCCGGTGCGTTTACCAGGAACAGGATGATGCTGGCAAGACTGGTGTTTCTTTGTCAAAGGATTTGATGGCGATTGCTGGTGGAGCATTGAAAACCAACATCACCACACTTGGTCCTTTGGTGCTACCAATTAGTGAACAGCTTCTATTTTTCGTGACTTTGCTGATGAAGAAGTTGTTCAAGGCTGATGTGAAGCCTTACATACCGGATTTCAAGCTTGCTTTTGATCATTTTTGCATACATGCTGGAGGCAGGGCTGTGATTGATGAGCTGGAGAAGAACCTACAGCTGCGTTCTGAGCATGTGGAGGCTTCTAGGATGACCCTGCACCGGTTTGGGAACACTTCCTCTAGCTCCATTTGGTATGAATTGGCTTACATTGAAGCCAAAGGGAGGATGAAGAAGGGCAACAGGGTTTGGCAAATTGCATTTGGAAGTGGATTCAAATGTAACAGTGCTGTTTGGCAGGCACTGGGAAATATTAAGCCTTCTCCTAATGGACCATGGGAAGACTGCATTGATAAGTATCCTGTGGAAATTGTCACATAG 1536 0.5176 MTTGGGGSGGGSAVGVQIQQQSRMALPDFLQSVNLKYVKLGYHYLISNLLTLFLVPLILVTLIQVSQTTDLHHLWLHLQYNLLTILTCSAVLVFGLTLYAVTRPRAVYLLDSACFRPAEHLKAPFRSFMDHSRLTGDFEESSLDFQRKILERSGLGEETYVPEAMHSIPPQPSMAAARAEAEQVMFGALDNLFHNTSLKPKDIGILIVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSALLLSNKPADRRRAKYRLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFVTLLMKKLFKADVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLRSEHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMKKGNRVWQIAFGSGFKCNSAVWQALGNIKPSPNGPWEDCIDKYPVEIVT 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00161 511 PANTHER 3-KETOACYL-COA SYNTHASE 76 508 IPR012392 GO:0006633|GO:0016020|GO:0016747
Phco2g00161 511 SUPERFAMILY Thiolase-like 316 485 IPR016039 GO:0016746
Phco2g00161 511 PIRSF Very_long_ch_3-ktacl-CoA_syn 28 511 IPR012392 GO:0006633|GO:0016020|GO:0016747
Phco2g00161 511 FunFam 3-ketoacyl-CoA synthase 117 486 - -
Phco2g00161 511 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 404 485 IPR013747 -
Phco2g00161 511 SUPERFAMILY Thiolase-like 93 311 IPR016039 GO:0016746
Phco2g00161 511 Pfam FAE1/Type III polyketide synthase-like protein 99 388 IPR013601 GO:0006633|GO:0016020|GO:0016747
Phco2g00161 511 CDD CHS_like 89 484 - -
Phco2g00161 511 Gene3D - 125 486 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00161 Phco-Chr2 1277099 1278634 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00161 2 1277099 1278634 Phco2g00161 2 1277099 1278634 ECH