Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00154 ATGAAGATGAAAAGTGGTTTCCATTTAATTGAAGTGGGAGGCTTGGCCCTTGTCTCACGTTCCACACCTATCATAATGCAATTCAGGAGCATAGTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCCTACCATCGTCATCCTCCTCCTCCTCATCATCATCTTCTTCTTCTTCATCACAGAGTCGGTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCCTGGCCTTCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTTCCAATATCACTGAAGCAGCCTGGCCCAAGAGACTCACCAATCCAGTGTTTTATTAGGAGAGAAAGAGTGTCTTCAACCTATTGTTTATATCTCGGCCTAAGCCCTGCACTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGTACTAGCAATACTTACATTGGAAAGTTGAGGTCTAATTTTCTGGGCACCAAGTTCACGATCCTGGATGGCGAGTCCCCACATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAAAGTCCATCTGAAGCAGGTACTTCCAAAGGTTGCTGCTGCTAACTACAAAGTGGCAACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGCACGATGCACTTGATACCTATATCTGCAATCCAAGAAGGAGGGAGTGCCCCAACTCCTTTGAAGTTTACAAATTATCTTAATGAGCATGTATCTACCACCACCTCCTCAGACTCAAAAGGAAGGAAGCCAGAAGTTGTAGAGTTTGACACAACTGACACTGAAAATACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTGCAATGCTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAAAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCTGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1359 0.4452 MKMKSGFHLIEVGGLALVSRSTPIIMQFRSIVRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPSSSSSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPSRRALVACSSVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRTSNTYIGKLRSNFLGTKFTILDGESPHDSSLPLNCKLQQKVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGSAPTPLKFTNYLNEHVSTTTSSDSKGRKPEVVEFDTTDTENTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00154 452 PRINTS Tubby superfamily signature 270 297 IPR000007 -
Phco2g00154 452 PRINTS Tubby superfamily signature 430 452 IPR000007 -
Phco2g00154 452 PRINTS Tubby superfamily signature 221 245 IPR000007 -
Phco2g00154 452 PRINTS Tubby superfamily signature 205 221 IPR000007 -
Phco2g00154 452 PRINTS Tubby superfamily signature 380 396 IPR000007 -
Phco2g00154 452 PRINTS Tubby superfamily signature 362 379 IPR000007 -
Phco2g00154 452 PRINTS Tubby superfamily signature 409 428 IPR000007 -
Phco2g00154 452 Gene3D - 82 135 - -
Phco2g00154 452 MobiDBLite consensus disorder prediction 343 357 - -
Phco2g00154 452 MobiDBLite consensus disorder prediction 66 88 - -
Phco2g00154 452 MobiDBLite consensus disorder prediction 324 358 - -
Phco2g00154 452 Gene3D Tubby Protein; Chain A 147 452 IPR025659 -
Phco2g00154 452 PANTHER TUBBY-RELATED 61 450 - -
Phco2g00154 452 Pfam Tub family 150 447 IPR000007 -
Phco2g00154 452 SUPERFAMILY Tubby C-terminal domain-like 138 452 IPR025659 -
Phco2g00154 452 SUPERFAMILY F-box domain 77 133 IPR036047 GO:0005515
Phco2g00154 452 CDD F-box_AtTLP-like 89 133 - -
Phco2g00154 452 ProSitePatterns Tub family signature 1. 380 393 IPR018066 -
Phco2g00154 452 MobiDBLite consensus disorder prediction 49 88 - -
Phco2g00154 452 ProSitePatterns Tub family signature 2. 437 452 IPR018066 -
Phco2g00154 452 Pfam F-box domain 89 136 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00154 Phco-Chr2 1249432 1252830 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phco2g00154 Tub 5.7e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00154 2 1249432 1252830 Phco2g00154 2 1249432 1252830 ECH