Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00127 ATGAGTGGTGCTGCATTCCTCTACGGTTCGCTTATTCATCCACCATCACCTTTGATTCAACAACAACGCTATCATTCTTTATCACCACCAATCCCAATTCGACCCCTATGCATATCCCCTCTCACTATCGCAACTGTTTCCACCACCTCCGTTCTCCACCGCGATTCCGAAGTTGAGCTCGCGTCGTTGTCATCGTCTATCGACTCAAGCGACGCCGTTTCACCGCAGAATGAAACGGTTCGGCTGGAGACAGAGCGGCACACCGACGAAACAGTTCAGCCGCCGCTCTCTTCCGAAGATAAAGGAACTAGACTTCGAAAGAAGAAAGAAGACGAAGTCGTTTCGGATAACCGCTTCAAGCTCCGCAACGGAAGAGAAGTTTTTGAGGAAAAAGCGTATCTCGTAGGTGTCGAGCGTAAGAACGATGTTCAGGATTTTGGAAACGAAGAGTCCCTGAGCGAATTGGCGCAGTTAGCTGACACTGCTGGATTATTGGTTGTTGGCTCTACTTACCAGAAGCTCACTTCTCCAAACCCTCGGACATACATTGGCTCTGGCAAGGTTTCTGAAATTAAGAGTGCAATTCATGCATTGGATGTTGAAACCGTTATCTTTGATGATGAACTGTCAGCTGGGCAATTGCGCAACTTGGAAAAGATTTTTGGTGGAGATGTGAGAGTTTGTGATCGAACTGCTCTCATCCTTGATATATTTAATCAACGAGCAGCAACACATGAAGCGTCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAAGCTGGAGGAAAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGATAAACGTATTCTGCGTAATCAAATTGGTATTCTAAAAAAAGAGCTAGAATCTGTTAGGAAACATCGAAAGCAGTATCGTAGCAGGCGTCTCTCAGTGCCTGTGCCAGTGGTATCTTTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTTTGAATCAACTGACTGGAGCAGATGTTCTTGCTGAGGACAAATTATTTGCAACTTTAGATCCAACTACGAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACTACTTTAGTTGCTGCCTTTAGAGCTACACTGGAGGAGATATCGGAGTCATCATTGATGGTGCATGTGGTTGATATAAGTCATCCCCTGGCTGAGCAACAGATAAATGCAGTCGACAAAGTCTTGTCAGAACTAGATGTATCATCAATTCCGAAATTGATGGTCTGGAACAAGGTTGATAAAGTTAGTGATCCCCATAAACTCAGGCTAGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCTGCTATAAGTGGTGACGGTTTACAAGAATTTTGTAATGCAGTTCAAGACAGGCTAAAGGACTCCATGGTTTGGGTAGAAGCTTTGGTCCCATTTGAAAATGGGGACCTTCTCAGTACCATACACCAGGTTGGAATGGTAGAGAAAATTGAATATACTGAGCAAGGGACATATATCAAGGCACACGTGCCCCTGCGTTTTGCAAGAATGCTCACACCCATGAGGCAACTGTGCGTATCGCGACCTTAA 1650 0.4418 MSGAAFLYGSLIHPPSPLIQQQRYHSLSPPIPIRPLCISPLTIATVSTTSVLHRDSEVELASLSSSIDSSDAVSPQNETVRLETERHTDETVQPPLSSEDKGTRLRKKKEDEVVSDNRFKLRNGREVFEEKAYLVGVERKNDVQDFGNEESLSELAQLADTAGLLVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHALDVETVIFDDELSAGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRSRRLSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLMVHVVDISHPLAEQQINAVDKVLSELDVSSIPKLMVWNKVDKVSDPHKLRLEAEKRDDVVCISAISGDGLQEFCNAVQDRLKDSMVWVEALVPFENGDLLSTIHQVGMVEKIEYTEQGTYIKAHVPLRFARMLTPMRQLCVSRP 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00127 549 Pfam HflX C-terminal domain 456 524 IPR045498 -
Phco2g00127 549 MobiDBLite consensus disorder prediction 64 109 - -
Phco2g00127 549 Gene3D - 141 241 IPR042108 -
Phco2g00127 549 MobiDBLite consensus disorder prediction 64 79 - -
Phco2g00127 549 FunFam Predicted protein 143 265 - -
Phco2g00127 549 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 324 490 IPR030394 GO:0005525
Phco2g00127 549 Pfam GTP-binding GTPase N-terminal 149 238 IPR025121 -
Phco2g00127 549 Hamap GTPase HflX [hflX]. 152 515 IPR016496 GO:0005525
Phco2g00127 549 NCBIfam GTPase HflX 131 485 IPR016496 GO:0005525
Phco2g00127 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 496 IPR027417 -
Phco2g00127 549 MobiDBLite consensus disorder prediction 80 109 - -
Phco2g00127 549 Pfam GTP-binding GTPase Middle Region 241 318 IPR032305 -
Phco2g00127 549 Gene3D - 242 309 - -
Phco2g00127 549 Pfam 50S ribosome-binding GTPase 326 444 IPR006073 GO:0005525
Phco2g00127 549 CDD HflX 283 486 IPR030394 GO:0005525
Phco2g00127 549 PRINTS GTP1/OBG GTP-binding protein family signature 393 411 IPR006073 GO:0005525
Phco2g00127 549 PRINTS GTP1/OBG GTP-binding protein family signature 326 346 IPR006073 GO:0005525
Phco2g00127 549 PANTHER GTP-BINDING PROTEIN HFLX 79 533 IPR016496 GO:0005525
Phco2g00127 549 Gene3D - 323 491 IPR027417 -
Phco2g00127 549 FunFam GTPase HflX 323 492 - -
Phco2g00127 549 NCBIfam small GTP-binding protein domain 325 476 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00127 Phco-Chr2 1089852 1097574 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00127 2 1089852 1097574 Phco2g00127 2 1089852 1097574 ECH