Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00125 ATGACTGTGCAACCTATTGATGAGCATTCAAATGCGGTCCCCACAGCTGATCAAAACTCTTTTACCAATGCTGGAGATTCCCATGCCCATCTTGTTCCTAGAACAACACAATTAGGACTTGTGAACAGTGAACAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGTGCCGGTTTCTCTTCACTAATGACTGCTTCTGTCCCAAATTTAAGGGGCACTTCATGTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTGTGGCTTTCACAAAAGGGAAGGTTTGTTGTATAATCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTGGGCTTTTCCGGCAATGTCTTGAACTCTCAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAACGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGCCAATCAGGACAGATATCTTCATGTCCCAATAGTTCTGCTGCAAACTCCTCATGTGAGCTCTCACCTGCAGAGCGACAGAATTTGTTGGACAAAAAGACACAACTTTTGACCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATAGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCATCTGAACCATACACTGCACTTGCCTTGCGCACAATATCGCGCCACTTTCGGTGTTTACGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACTAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAAGAAGAATTTGGCGTTTCTGAGATGAGCAGCAATCTATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTCCAATCTTCTGACAGCAAAAGGGAAGAGTCCCTGGACAACTTAATAAAAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGTCTCAGAGTTGGACAGAGGGATCCAGAGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAACTGGGAAACTGCAGGGTGACCAAAGGTTCAACATTAATAACAGCAACAGTCCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTCCTGCTACATATGATTTATCAGAGTTAGGTAACATTGGTGTGGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTATGAAAGTGAAGGATTTGGTGTGTCCAATGATGAGATGCATAGAAGACGCAAGAAAACAATGGCTTCTTCCCCAGAGGCTGATTTGCTAGATTACCATTTCACAGACCAAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAGTTTGTTGTGTGA 1779 0.439 MTVQPIDEHSNAVPTADQNSFTNAGDSHAHLVPRTTQLGLVNSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVPNLRGTSCLKDDEASLQRELRNAECMASLASCGFHKREGLLYNPQHPSMCLSEGQSDGSLGFSGNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTQLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGASEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGVSEMSSNLLSSENTLKAPRDDVQSSDSKREESLDNLIKVDDSVIQHHGLKLDHVSELDRGIQSSDHGENAMDPRTGKLQGDQRFNINNSNSPYYGEGCIIAPTPATYDLSELGNIGVGGQVSLALELRNYESEGFGVSNDEMHRRRKKTMASSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00125 592 ProSiteProfiles 'Homeobox' domain profile. 334 397 IPR001356 GO:0003677
Phco2g00125 592 MobiDBLite consensus disorder prediction 186 222 - -
Phco2g00125 592 SMART HOX_1 337 401 IPR001356 GO:0003677
Phco2g00125 592 Coils Coil 158 178 - -
Phco2g00125 592 MobiDBLite consensus disorder prediction 1 27 - -
Phco2g00125 592 SUPERFAMILY Homeodomain-like 338 404 IPR009057 -
Phco2g00125 592 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 426 - -
Phco2g00125 592 Pfam Homeobox KN domain 354 393 IPR008422 GO:0003677|GO:0006355
Phco2g00125 592 SMART prehox3 146 296 IPR006563 -
Phco2g00125 592 Pfam Associated with HOX 152 295 IPR006563 -
Phco2g00125 592 Gene3D - 334 411 - -
Phco2g00125 592 MobiDBLite consensus disorder prediction 196 222 - -
Phco2g00125 592 CDD homeodomain 337 398 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00125 Phco-Chr2 1083242 1086183 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco2g00125 POX 5.1e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00125 2 1083242 1086183 Phco2g00125 2 1083242 1086183 ECH
Phco7g00342 7 2433124 2434724 Phco2g00125 2 1083242 1086183 PCT