Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00123 ATGTATTCAGACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCTCATAAATACAGTGAAACTGTTGGAGGACACAATGAGTTGAAGTTCATCTCCTCCATGAGGGACACAATGACTGTGCAACCTATTGATGAGCATTCGAATGCGGCCCCCACAGGTGATCAAGACTCTTTTACCAATGCTGGAGATTCCCATTCCCATCTTGTTCCTAGAACAACACAATTGGGACTTGTGAACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGTGCCGGTTTCTCTTCACTAATGACTGCTTCTGTCCAAAGTTTAAGGGGCACTTCATGTCTCAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTGTGGCTTTCACAAAAGGGAAGGTTTGTTGTATAATCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTGGGCTTTTCCGGCAATGTCTTGAACTCTCAATACCTCAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGCCAATCTGGGCAGATATCTTCATGTCCCAATAGTTCTGCTGCAAACACTTCATGTGAGCTCTCACCTGCAGAACGACAGAATTTGTTGGACAAGAAGACAAAACTTTTATCCATGTTGGATGAGGTTGATAAAAGGTACAGACAGTACTGCCACCAGATGCAGATAGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACCATACACTGCACTTGCGTTGCGCACAATATCGCGGCATTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCCAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGCGATTCTGAGATTAGCAGCAATCTATTACCATCAGAGAACGCACTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGCAAAAGGGAAGAGTCCCAGGATAACATAATAACAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGTATCCAAAGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGGTGACCAAAGGTTCAACATTAATAACAGCAACAGTCCTTATTATGGGGAAGGCTGTATAATTGCTCCTACTCCTGCTACATATGATTTATCAGAGTTAGGTAACATTGGTGTGGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTATGAAAGTGAAGGATTTGGCGTGTCCAATGATGAGATGCATAGAAGACGCAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATTTGATAGATTACCATTTCACAGACCAAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGA 1914 0.4378 MYSDQAFSSGSYADMLSGNPLLPHKYSETVGGHNELKFISSMRDTMTVQPIDEHSNAAPTGDQDSFTNAGDSHSHLVPRTTQLGLVNSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMTASVQSLRGTSCLKDDEASLQRELRNAECMASLASCGFHKREGLLYNPQHPSMCLSEGQSDGSLGFSGNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANTSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEISSNLLPSENALKAPRDDVQSSDSKREESQDNIITVDDSVIQHHGLKLDHASELDRGIQSSDHGENAMDPRIGKLQGDQRFNINNSNSPYYGEGCIIAPTPATYDLSELGNIGVGGQVSLALELRNYESEGFGVSNDEMHRRRKKTLASSPEADLIDYHFTDQGKQQNKFGNPHLLHEFVV 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00123 637 MobiDBLite consensus disorder prediction 463 489 - -
Phco2g00123 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 477 - -
Phco2g00123 637 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Phco2g00123 637 MobiDBLite consensus disorder prediction 472 489 - -
Phco2g00123 637 MobiDBLite consensus disorder prediction 241 267 - -
Phco2g00123 637 Pfam Associated with HOX 197 340 IPR006563 -
Phco2g00123 637 Gene3D - 379 456 - -
Phco2g00123 637 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Phco2g00123 637 SMART prehox3 191 341 IPR006563 -
Phco2g00123 637 Coils Coil 203 223 - -
Phco2g00123 637 CDD homeodomain 382 443 IPR001356 GO:0003677
Phco2g00123 637 SMART HOX_1 382 446 IPR001356 GO:0003677
Phco2g00123 637 MobiDBLite consensus disorder prediction 52 74 - -
Phco2g00123 637 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Phco2g00123 637 FunFam BEL1-like homeodomain protein 4 385 447 - -
Phco2g00123 637 MobiDBLite consensus disorder prediction 231 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00123 Phco-Chr2 1071593 1074660 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco2g00123 POX 5e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00123 2 1071593 1074660 Phco2g00123 2 1071593 1074660 ECH
Phco2g00123 2 1071593 1074660 Phco7g00342 7 2433124 2434724 PCT
Phco7g00341 7 2427339 2430794 Phco2g00123 2 1071593 1074660 PCT