Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00117 ATGAACTTGAACTTCTCTTCTCCGATTATCTCTCCCAATAGACGCTTCCAAGTTCCAACCATGGTTGATCCTAAGCACTACGAACAAATTGCTATAAATGAACAAGTTGTGAACAACATCATTCTGTCGTATCTTACCCACAATTGCTACGGAGAGTCTTCAGAGGCATTCATTGCTTGCACTGGGATGAATAGGCCTGCAGATCATTTGGAGAACACGCAAAAAAGAAAAAGTAGGTTTATTGTTGTCTTTCATAAATTTCTTTCATCATTAGGAATCGTTAACTCTGCACTGGAGGGAGATACACTTAAAGCTATTGAGCTCACTGAAGAACTGTCACATGATATTTTAGATAACAATAAGGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTTGGCCTTGTTTGCTCTAAGAAATGGTCAGAAGCTGTGGAGTTTGCTCAGACCAATTTGGGTCCTTTTGGGAGGCACCCAATATATACCGAAAGAGTTGAAGATTTTATGTCCCTTCTTGCTTTTAAGAATACACTGGAATCCCCAATGGTTCATCTGACTACCACGGGCTATCGGCAACAAGTGGTGGATACTTTGAATCGCACACTTCTCGCATACTTTAACCTTCCCAGCCGCAGTACTATGGAGCGCCTTATACAGCAGACAACACTAGTTAGAGAAGGCTTAAGACGAACGAAGGGGTTTCCACCATTTTCGTTGAGGATTTTTCTTAGACGTTGA 738 0.4106 MNLNFSSPIISPNRRFQVPTMVDPKHYEQIAINEQVVNNIILSYLTHNCYGESSEAFIACTGMNRPADHLENTQKRKSRFIVVFHKFLSSLGIVNSALEGDTLKAIELTEELSHDILDNNKDLLFDLLSLHFVGLVCSKKWSEAVEFAQTNLGPFGRHPIYTERVEDFMSLLAFKNTLESPMVHLTTTGYRQQVVDTLNRTLLAYFNLPSRSTMERLIQQTTLVREGLRRTKGFPPFSLRIFLRR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00117 245 PANTHER RAN BINDING PROTEIN 9-RELATED 26 221 - -
Phco2g00117 245 SMART toby_final6 139 234 IPR013144 -
Phco2g00117 245 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 86 143 IPR006595 -
Phco2g00117 245 Pfam CTLH/CRA C-terminal to LisH motif domain 93 224 IPR024964 -
Phco2g00117 245 ProSiteProfiles LIS1 homology (LisH) motif profile. 33 65 IPR006594 GO:0005515
Phco2g00117 245 SMART ctlh 86 143 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00117 Phco-Chr2 1041451 1046726 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00117 2 1041451 1046726 Phco2g00117 2 1041451 1046726 ECH
Phco2g00117 2 1041451 1046726 Phco7g00333 7 2372152 2374870 PCT