Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00116 ATGGTGTCTCTAATATCGCCACCTTCTTCGTCTTCCAACGTTCAATTGCGCGAAACTCGTTTCTTCTCCACTCTCTTCATTTCACCAAGGAGCGTCCAATTCCTCCGCAACACACGAAACCACCAAAATCACAAATGGAAAACGGTACGGTGCGGCGTTACCAGCGCCGCCGCGTCTCCTCCGCCGTCGTTGATGAAGGAGCCTCACAAATTCTTCGACCACGTAATCATCACCGTTCGCGCGGGTGACGGAGGCCACGGCGCGGTGCTGAATCACAGAGAGAAGAACGAGCAGGAGCAGGGTAAAACGAAGAAGAAAGGGAAAGGCTCGTTCAAGAGGGACTTCGATGGGTCGCTCATACTCCCTACGGGAGGGCACGGAGGGGACGTGGTGATCTACGCCGACGAAGCTATAGACACGTTGCTGGAGTTTCACAGCAAGAGCAGGTATCAAGCCAAGCGCGGTGGCAACGTTGGTGCGATGGGCGTTTTGACGTCGATGTTGCGGAATGGACTTGTGGCGCCCACGATGCGCATTCCTGTTCCTGTAGGTACAGTTGTGAAAAGCAAGCGAGGGAAGGTGTCGGCTGATCTAGCACAACCTGGTGATGAAGTTCTCGTCGCAAGGGGAGGACAAGGAGGGATTAGCTTGTTGGAAATGCCACATGGTCAAAGAAAAAAGATGATGGCTCAGACAACTAATGTGATGAGAGATGATTCAGACAAGATTTTAGTTCATGGTCAACGTGGAGAGGAAGTTAAGTTGGAGTTGATCCTTCGAGTTGTAGCTGATGTTGGTCTGGTTGGACTTCCAAATGCTGGGAAATCAACACTTCTGGCTGCCATTACACTTGCTAAACCTGATATTGCTGATTACCCTTTTACAACATTAATGCCAAATCTTGGACGCCTAGGTGGTGATCCCAGCTTGGGGGCAGGAATGTATTCATCCGAAGCTACATTGGCAGATTTGCCTGGTCTTATTGAAGGCGCCCACTTAGGAAAGGGTCTTGGTCGCAATTTTTTGAGGCACCTCAGGAGGACCCGGCTATTGGTCCATGTTGTTGATGCTGCCACGGAGAGTCCTGTAAATGACTACAGAACTGTCAGAGAAGAGTTGCGCATGTATAATCCTGCTTACCTTGAGAGACCGTATGTTGTAGTTTTGAATAAGATTGACCTACCAGAGGCAAAGGACAGACTTCCATCATTGATTCAAGAAATCATGAAAATTGGCAACTGTGGTGCTCAATTGTCTGATGAAACTGACACGAAGGAGAAAAGACTGGAGGACTATCCTAGACCTCTTTCTGTTGTTGGAGTCAGTGTTCTAAAGGGTGTCCAGATTAATGAGATGTTAAAGGAGATAAGGGCTGCTCTAAAGAAGTGCAAGGATTCTAGTGAAACATTGGTGTCTACTTGA 1422 0.4866 MVSLISPPSSSSNVQLRETRFFSTLFISPRSVQFLRNTRNHQNHKWKTVRCGVTSAAASPPPSLMKEPHKFFDHVIITVRAGDGGHGAVLNHREKNEQEQGKTKKKGKGSFKRDFDGSLILPTGGHGGDVVIYADEAIDTLLEFHSKSRYQAKRGGNVGAMGVLTSMLRNGLVAPTMRIPVPVGTVVKSKRGKVSADLAQPGDEVLVARGGQGGISLLEMPHGQRKKMMAQTTNVMRDDSDKILVHGQRGEEVKLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAATESPVNDYRTVREELRMYNPAYLERPYVVVLNKIDLPEAKDRLPSLIQEIMKIGNCGAQLSDETDTKEKRLEDYPRPLSVVGVSVLKGVQINEMLKEIRAALKKCKDSSETLVST 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00116 473 PRINTS GTP1/OBG GTP-binding protein family signature 321 336 IPR006073 GO:0005525
Phco2g00116 473 PRINTS GTP1/OBG GTP-binding protein family signature 338 356 IPR006073 GO:0005525
Phco2g00116 473 PRINTS GTP1/OBG GTP-binding protein family signature 286 304 IPR006073 GO:0005525
Phco2g00116 473 PRINTS GTP1/OBG GTP-binding protein family signature 265 285 IPR006073 GO:0005525
Phco2g00116 473 Pfam GTP1/OBG 73 260 IPR006169 -
Phco2g00116 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 462 IPR027417 -
Phco2g00116 473 MobiDBLite consensus disorder prediction 86 110 - -
Phco2g00116 473 CDD Obg 263 460 IPR031167 GO:0005525
Phco2g00116 473 ProSitePatterns GTP1/OBG family signature. 323 336 IPR006074 GO:0005525
Phco2g00116 473 SUPERFAMILY Obg GTP-binding protein N-terminal domain 70 226 IPR036726 -
Phco2g00116 473 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 263 461 IPR031167 GO:0005525
Phco2g00116 473 Gene3D - 262 469 IPR027417 -
Phco2g00116 473 Gene3D GTP1/OBG domain 70 261 IPR036726 -
Phco2g00116 473 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 66 458 IPR045086 GO:0003924|GO:0005525
Phco2g00116 473 NCBIfam small GTP-binding protein domain 264 413 IPR005225 GO:0005525
Phco2g00116 473 ProSiteProfiles Obg domain profile. 69 262 IPR006169 -
Phco2g00116 473 MobiDBLite consensus disorder prediction 87 110 - -
Phco2g00116 473 Pfam 50S ribosome-binding GTPase 264 391 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00116 Phco-Chr2 1032274 1039148 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00116 2 1032274 1039148 Phco2g00116 2 1032274 1039148 ECH