Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00112 ATGGTAATGGGAAGGGTGAAAGGTGAAGAGGCTTCAATGAATGGAATAATCAACCCTAGCTATGCTGATGCGAAATTTCTACTTTTCATGGGTCAGAGAAGAACCTATTTTGTTTTGCAAAAAAACGACGCCGTTGACACGTGTCAAAATTTGATTGGCCAAGCTGCTGTTAAATTTCCACCAATTCCGTCTTCTCCCAATCCATTTCCCTTTGACTTCCCCATGGCTCGCTACACCCTCTGCGCTCTCCTCCTCTTCGCCGCCGTGGCCGCCGCAGCTGGAGCCAACTCCGACGCCGATGACATCCTGATCCGTCAGGTGGTGCCGGAGGGCGAGGTGGAGGACCACCTCCTGAACGCGGAGCACCACTTCTCGACCTTCAAGGCGAAGTTCGGGAAAACCTACGCGACGAAGGAGGAGCACGATCATCGCTTCGGCGTATTCAAGTCAAACATGCGCAGGGCGAGGCTTCACGCGCAACTCGACCCCTCCGCAGTCCACGGCGTCACTAAATTCTCCGATCTCACTCCGGCGGAGTTCCACCGCCAGTTCCTCGGCCTCAAACCGCTCCGCTTACCTGCGCACGCGCAGAAGGCCCCCATCCTCCCCACCAACAATCTCCCCAAAGATTTCGACTGGAGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGTTCGTGTGGTTCGTGTTGGTCTTTCAGTACCACGGGGGCGTTGGAAGGAGCTCACTTTTTGGCTACTGGTGAGCTCGTGAGCCTTAGTGAGCAACAGCTTGTGGATTGTGACCACGTGTGTGATCCAGAAGAATATGGAGCGTGTGACTCAGGCTGTAATGGTGGTTTGATGAACAACGCATTTGAGTACATAATTGGGTCTGGGGGAGTACAGAGAGAAAAGGATTATCCGTACACTGGAAGAGATGGCACCTGCAAATTTGATAAAAGCAAAATTGCAGCTTCTGTATCTAATTACAGTGTGGTTTCCCTTGACGAAGAACAAATTGCTGCAAATCTTGTGAAGAATGGCCCTCTTGCAGTTGCTATCAATGCAGTTTATATGCAGACATACGTAGGTGGTGTCTCTTGTCCATACATCTGTGGGAAGCATTTGGATCATGGGGTTCTTTTAGTGGGTTATGGTGAAGGTGCATATGCTCCAATTCGTTTTAAGGAAAAGCCTTACTGGATCATTAAGAACTCGTGGGGGGAGAACTGGGGAGAGAATGGATACTACAAGATCTGCAGAGGTCGAAATGTATGTGGAGTGGATTCCATGGTCTCAACCGTAGGTGCTATACATGCATCCAGCCAATAA 1317 0.5042 MVMGRVKGEEASMNGIINPSYADAKFLLFMGQRRTYFVLQKNDAVDTCQNLIGQAAVKFPPIPSSPNPFPFDFPMARYTLCALLLFAAVAAAAGANSDADDILIRQVVPEGEVEDHLLNAEHHFSTFKAKFGKTYATKEEHDHRFGVFKSNMRRARLHAQLDPSAVHGVTKFSDLTPAEFHRQFLGLKPLRLPAHAQKAPILPTNNLPKDFDWRDKGAVTNVKDQGSCGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHVCDPEEYGACDSGCNGGLMNNAFEYIIGSGGVQREKDYPYTGRDGTCKFDKSKIAASVSNYSVVSLDEEQIAANLVKNGPLAVAINAVYMQTYVGGVSCPYICGKHLDHGVLLVGYGEGAYAPIRFKEKPYWIIKNSWGENWGENGYYKICRGRNVCGVDSMVSTVGAIHASSQ 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00112 438 Gene3D Cysteine proteinases 93 430 - -
Phco2g00112 438 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 120 423 IPR013128 GO:0008234
Phco2g00112 438 SMART Inhibitor_I29_2 124 180 IPR013201 -
Phco2g00112 438 Pfam Papain family cysteine protease 207 429 IPR000668 GO:0006508|GO:0008234
Phco2g00112 438 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 395 414 IPR025661 -
Phco2g00112 438 SMART pept_c1 207 431 IPR000668 GO:0006508|GO:0008234
Phco2g00112 438 PRINTS Papain cysteine protease (C1) family signature 373 383 IPR000668 GO:0006508|GO:0008234
Phco2g00112 438 PRINTS Papain cysteine protease (C1) family signature 225 240 IPR000668 GO:0006508|GO:0008234
Phco2g00112 438 PRINTS Papain cysteine protease (C1) family signature 395 401 IPR000668 GO:0006508|GO:0008234
Phco2g00112 438 CDD Peptidase_C1A 208 430 IPR039417 -
Phco2g00112 438 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 225 236 IPR000169 -
Phco2g00112 438 SUPERFAMILY Cysteine proteinases 121 429 IPR038765 -
Phco2g00112 438 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 371 381 IPR025660 -
Phco2g00112 438 Pfam Cathepsin propeptide inhibitor domain (I29) 124 180 IPR013201 -
Phco2g00112 438 FunFam Cysteine protease RD19A 102 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00112 Phco-Chr2 994972 1005205 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00112 2 994972 1005205 Phco7g00327 7 2319460 2320973 PCT