Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00111 ATGGCTGAGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCAGAAGAGGAGGAGGATCAGAGAGAGGACAACAACACCAACACTAACCACAACAGTCAATTTTTGTTCAGAAACGTTAACGAGGAGATCTACAACGCCAACAAGGGCTTCGAGATATGGCCACAATCCTCGTACCACCACAACTTCACCAACTACTACTCCTTCGGCGTGGGCCCTAGTCGCAGAAACAACGCCAACACCAACAATAGCTCCTCCAACAACGTAAACGACGACGTTTCTGTCTCTTTCTCGGATGACTCCAACCGCTTCGGGTTCACGGTCATGAGGTCCGGTGGCGGCGTAGGTGGCGGCGGAGGCGGCGGCATGAACTGTCAGGACTGTGGGAACCAAGCTAAGAAAGACTGTTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACTCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAGCGCCGTGAACGACAGCAACAACAACTAGCTACGTTGCAGCAACAAAATCAACCTCCACAGTTTCGTGGAGATCACTCGAAAAGACACAGAGAAAATATCGAAGGTGTTGCAGCTGGTGGTTCTCTCGCTTGCGCTCCAGTTCCTATCGCCACCACAGGGTTGGAGGTGGGTCAATTTCCACCGGAGCTAAACTCTCCAGCGGTGTTTCGGTGTGTCAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTACCAAACAGCAGTGAACATAGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAATGGACGGTCCTTACGCCAGTGCAGGTTGCGAGGGTTCCTCCGGTGGCGGCGGTGAAGCTCGGGCACTCACTCTCATGGCCGCCACAACCACCACCACAACAGCTGGAAACCCTTTTGACGCTTCACTCTACACTGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 999 0.5315 MAEFFSLGGRHNKAEEEEDQREDNNTNTNHNSQFLFRNVNEEIYNANKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNANTNNSSSNNVNDDVSVSFSDDSNRFGFTVMRSGGGVGGGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQQLATLQQQNQPPQFRGDHSKRHRENIEGVAAGGSLACAPVPIATTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGMDGPYASAGCEGSSGGGGEARALTLMAATTTTTTAGNPFDASLYTAPMNAFMAGTQFFPPPRS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00111 332 MobiDBLite consensus disorder prediction 166 185 - -
Phco2g00111 332 MobiDBLite consensus disorder prediction 1 33 - -
Phco2g00111 332 MobiDBLite consensus disorder prediction 9 25 - -
Phco2g00111 332 NCBIfam putative zinc finger domain, LRP1 type 123 165 IPR006510 -
Phco2g00111 332 NCBIfam LRP1 C-terminal domain 222 270 IPR006511 -
Phco2g00111 332 MobiDBLite consensus disorder prediction 166 190 - -
Phco2g00111 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 304 IPR007818 GO:0003700|GO:0006355
Phco2g00111 332 Pfam Domain of unknown function (DUF702) 121 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00111 Phco-Chr2 985399 986855 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco2g00111 DUF702 2.6e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00111 2 985399 986855 Phco7g00325 7 2308079 2309565 PCT