Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00109 ATGAAGATCCAATGCGACGTCTGTAACAAACACGATGCATCGGTCTTTTGCACCGCCGATGAAGCTGCCCTCTGCGACGGCTGCGACCACCGCATCCACAACGCCAACAAACTAGCCTCCAAACACCAACGTTTCTCTCTTCTTCGACCTAAACAACACCCTCTCTGCGATATTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACAGGGCGATTCTGTGCAGGGAGTGTGACGTGTCGATTCACTCTGCTAACGAACACACCCTTAAGCATGATAGGTTCCTTCTCACTGGTGTTAAACTTTCTGCTTCTTCTTCATCACAAGAAACTACCTCTACTTCAAACTCAGCCCCTGATTCTCTTCTTGAAGTTTCGCTTCAAAAAACAACACCTTTATCTTCCACCGTGAGTAAGATTGGTGTTGAAGCAGCGGCTTCCACAAGTGCTAGCAGCATATCAGAGTATTTGATAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTCGATTCATATTCTGTTCCCTTTGGTTTCTCCAAGAGTGATGAAGTGTTGCCACGGTTTGGTGGAGAGACGGAGGGTCATCAGGGTTCCTTCTCAACAGAGCACGTGGGGATATGGGTTCCTCAAGCGCCACCACCTCTTCTGAGTTATTCACAGATGGATAAAGTGATTGGTCAAAGCGAGAGCAACATGAAAGGTAGCAGATCGAGGTTGAAGGATGATAATTTCACTGTGCCACAGATTAGTCCTCAGTCCAATTCCAAGAGAGGAAGTCCTGTTTTGTTTGACCTTTTTTTCTTGTCTCCTCCTCCATCTTTCCCTGCTGGGCTTTGTTTTGATAAATTTGTGTACCTTTCTGCTACTGACTGTAAATATAAACTTTTCCAATTAGAGATGGAGATGAAAGAGGGAAAAAGGGGTGATGGAGAAGATGATTGA 948 0.4589 MKIQCDVCNKHDASVFCTADEAALCDGCDHRIHNANKLASKHQRFSLLRPKQHPLCDICQERRAFTFCQQDRAILCRECDVSIHSANEHTLKHDRFLLTGVKLSASSSSQETTSTSNSAPDSLLEVSLQKTTPLSSTVSKIGVEAAASTSASSISEYLIETLPGWQVEDFLDSYSVPFGFSKSDEVLPRFGGETEGHQGSFSTEHVGIWVPQAPPPLLSYSQMDKVIGQSESNMKGSRSRLKDDNFTVPQISPQSNSKRGSPVLFDLFFLSPPPSFPAGLCFDKFVYLSATDCKYKLFQLEMEMKEGKRGDGEDD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00109 315 MobiDBLite consensus disorder prediction 232 258 - -
Phco2g00109 315 CDD Bbox1_BBX-like 5 47 - -
Phco2g00109 315 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Phco2g00109 315 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Phco2g00109 315 CDD Bbox1_BBX-like 55 98 - -
Phco2g00109 315 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Phco2g00109 315 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phco2g00109 315 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 257 - -
Phco2g00109 315 MobiDBLite consensus disorder prediction 243 258 - -
Phco2g00109 315 FunFam B-box zinc finger protein 21 1 96 - -
Phco2g00109 315 Gene3D Classic Zinc Finger 1 93 - -
Phco2g00109 315 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phco2g00109 315 SMART bboxneu5 51 98 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00109 Phco-Chr2 960661 962529 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco2g00109 zf-B_box 2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00109 2 960661 962529 Phco7g00321 7 2260811 2261918 PCT