LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g00104	ATGGAGGGAGAGGATATTAGGTCTGGGACCAGGAAGAAGCGATCCAAGAAGGAAATTGGTTTTGACTCTGACGACGACGAGCCCATTGGGTCAATCTTCAAGCTGAAGAGGGCCAAGAGGAAGGGTAGTGGCAGTGGTGAGGCTGTTAGGGAGAAGGAGGATTTGGGGGGTATGGATGATAATGATACCTTGGCTAGCTTTAGGAAGAGATTGAAGGGTCCTAAGAGAGATCAGGGATCTGGGGTTGCAAGAGGAGCAAGTCCTGCTTTGCATGTGTCTGATGAAGATTTGGTTGGATTGGGAGCTAAGGGTAAGGAGGAGAAAGGGGTGGCCTTGGTGCCTGGTGGTGTGGACATGCAGATGCAGGATTCTTCTGATCAACACATGGAGGATTCGTTGTCTGCGATTTTTCACAAGGCACAGTCTAGTTCTGCTAGGAAATCTCGTGGGGGTTCGAGACAGAAAAGGGGGATTCAGAAGGTGGATGGTGGGTTGAGCCCAGGAGGTTTTGTGGAAGCTGTGGATTCTGAGGTTGAAAGTAGATCCGGATCTGCTTCTGGCTCGAAATTGGTTGGGGGGAATGATGCTTTACCTCAAGCGTCTGAACCGGTTGTCACATCTGTGGTGGAGGATCAGAAGTGTGTTAATGACTGTTTTCATGAGGAAATTGCGAAGGGTGAATGTGATTTGGACATTCCAGATGGATTGAATCAACCAAAAGATGTCTACCATGAAGATGGGAAGCAATTTTCTCGTGCTCTAAAAGCTGAAGATATTTCTTGTGATTCTGACAAGAAGGTTGCATTGCAGGAAAGCGTTGTTATCAGTGGTGGTTTACATAAGTTATCTTCCATGTTACTCGATGAAATAGTTGATACTGCCTCTCTCTCAAAAGTGGGGGAAGGGGAAAGCCAATTTTCAGAGGTCGCAGAGCCTGAGAATAGATTGACTGGTGAACTAGTGCAAGCATGCAACAGTGCTTCAGAACATGATGTTTCTAATTCTTCAGGAAAAGGAAATGTCTTGACATCTTGGCACACTGAACTCTTGATTAAATCAACTGAAAATGTATTGAAAGAGAATGATGATATGGTTTCTGGAAAAGGTTTTCAGGAATCCTCAAGAAATGGAGCTCTAAAGTTATCTGGATGCCACATGGAAGTTGATGGAGGTGGAAAATCAGAAACTGAGTTTGTTTCTGATAGAAATTTATGTGATTATAGTAATTTAGATACAAAGGCTGAAGTGCAAGATTTTGTTCTAGGTTTTTCACCTAAGAGAAATGATGTAACTGTCAGTGGTTCTTCTATGGTGTCTAATGAAGCTGAATTGGATGCCCGATCAAATCACCCAGAGAAACCTATAGAAGCTTGCAATATTCCAATAGGCCCCCCCACTGTTTCAATTCTGAAATGTAGCTCAGTTTTAGATCCAGTTCATTCGGATGGATCCTCTCTTCAATCTTCAATTCCAGATGAAAATGGGAACTCTGCAGAATACCATACCTCTGTCTCTGATTTTGTTGATAACGATGGTAAGATATCAGGCATTACACGGGTGGTGCGAAAGACCAAAATGCGTAAGCATGGAGACATGACATATGAGGGGGATGCTGATTGGGAGGTTTTAATTAATGATCAAACTCTAAATGAAAGTCAAGTTATGACAGATGTTGACCGCACTCTTAGAACAAGAATGAAGCATGATTCCTCTTTGAATACCGGTGAAGAATCTGAAAATGTTGCAGTAGTAGCGGTATCAGCTGGGCTGAAAGCCCGTAAAGCAGGTCCAATCGAGAAAATAAAGTTTAAAGAGATCTTGAAGCGAAAAGGTGGTCTCAAGGAATATTTGGACTGCAGAAATCAAATTTTAAGTCTTTGGAGCCGAGATGTCACACGGATATTGCCTCTTGCTGAATGTGGAGTTAGTGATACTGATTCTGAGGATGGAAGTCCTCGTTCTTCTCTTATTAGGGAGGTCTATGCATTTCTTGATCAATATGGTTATATAAATGTTGGAATTGCCTCCCAGAAGGAGAATGTTGGAAGTAGTGCCAGGCACTGTTATAAACTGGTAAAAGAAAAAGGTTTTGAGGAAAGTCTCGCAGCTTCAATGGCTGACTCTGAAGATGGAGTTTCCTTTCTTGTTGGGCAGACTAAAATGTCAGATACTTTTAATGAGATTAACAATGGTCTACCTAAGGATTGCAATGACCTAACAACGGAAGCTGCAGAAGGCATGGGGCACAGTAATGAAGTGAAGTTGGATTTATCAAACATATCACAACAGGCAGAAGGAAAAAAAATTGATTACCAGGAAAATGATGGGTTTCAGGATGGAACTATTGACAGTTCCGTTCCTTCTTCCAACTTTGCTGATTGCAGATTAACGTCTCTGGTAGCTAAAGAGAAAATCAATGACTCTACCTGCATTAAATCTGTCTGGGGTGGTCAGGTAGGTGACAATCTGCAGTCTGATTTAGATCCTAGAAAGAGAGTAATTGTGATTGGAGCTGGGCCTGCCGGGCTAACTGCTGCTCGCCACTTGCAACGTCAGGGATTTCCTGTAACTGTTCTTGAGGCTAGGGGTAGGATAGGAGGTCGTGTGTTTACTGATCACTCCTCACTTTCTGTCCCTGTTGATCTTGGTGCTAGCATTATAACTGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCGTTGATTTGTGCTCAGTTGGGCCTTGAGTTGACGGTGTTAAACAGTGATTGCCCTCTTTATGACATAGTGACAGAACAAAAAGTTCCTGCAGATATGGATGAAGCACTTGAAGCTGAATATAATACCCTTATAGATGACATGGTATTGGTTGTTGCTCAGAAAGGTGAACAAGCAATGAGAATGTCTCTTGAAGATGGTTTAGAATATGCCCTCAAGATTCGGCGTATGGCACGTTCTGAAAGCAGTGAAGAAACTGAACAAAATAATTCTGCAGATAGACCATTTGATTCTAAAAGGGACAGTTCTGTGGAAAAAAAGCTTGATGAGGAGATTTTGACTCCTCAGGAGAGAAGGGTTATGGATTGGCACTTTGCTCATTTGGAATATGGTTGTGCTGCTTCTCTTAATGATGTTTCTCTTCCCTACTGGAATCAAGATGACGTGTATGGAGGTTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGTTCTGTCGTTGAGTCTCTGGGAGAAGGAAATACAATTCACTTGAATCATGTTGTAACAAATGTGTCATACGGAATCAGGGAGCCTGGTCAGAGTTATAAAGTCAAAGTTTCTACATCAAATGGCAATGAGTTCTTTGGTGATGCTGTCCTTGTTACTGTTCCACTTGGCTGTTTGAAGGCTGAAACTATACAATTCTCCCCACCTTTGCCACAGTGGAAATGTTCTTCTGTTCAGCGTCTTGGTTATGGAGTTCTAAATAAAGTGGCTTTGGAATTTCCTAGTGTATTTTGGGATGATGCTGTGGACTACTTTGGAGCAACAGCTGAAGAGAGAAACAGTAGAGGTCACTGCTTTATGTTCTGGAATGTCAGGAAAACAGTAGGGGCTCCTGTCCTTATTGCATTAGTGGTTGGTAAGGCAGCCATAGATGGTCAAAGCTTGAGCTCTTCCGATCATGTTAAACATGCATTGAAGGTTCTCCGAAAACTTTTCGGGCAGGATTCAGTTCCAGATCCCGTTGCCTATGTTGTGACTGATTGGGGTAGGGATCCTTTTAGCTATGGTGCTTATTCTTACGTTAAGGTTGGAGCCTCAGGAGAAGACTATGATATATTAGGGAGACCAGTTGATAACTGCTTGTTTTTTGCTGGTGAAGCAACCTGCAAAGAGCACCCAGATACTGTTGGTGGTGCAATGATGAGTGGCCTAAGAGAGTCTGTTCGCATAATTGACATATTGAGCACTGGAAATGATTATATTGCCGAGGTGGAGGCATTGGAAGCTGCACGGGGACAGTTAGATCCTGAAAGGGATGAAGTGAGGGATATAATAAAGAGACTTGATGCAGTAGAACTTTCTAACATAATGTACAAGAACTCTTTAGATGGTGCTCAAATTTTAACCCGGGAAGCTTTGTTAAGGGAAATGTTCTTTAATACGAAAACCACTGGTGGACGCTTGCATGTGGCCAAACAATTGTTAACTCTTTCTGTTGGAAACTTGAAGTCTTTTGCTGGAAGTAAAGAGGGGCTAGCCATTCTCAATTCATGGATACTGGACTCAATGGGAAAGGATGGGACCCAACTCTTGAGGCACTGTTTGCGACTTCTTGTCCGTGTTTCAACTGATCTTCTTGCTGTACGATTATCAGGAATGGGAAAAACAGTGAAGGAAAAAGTTTGTGTGCATACTAGCCGTGATATTCGTGCTATAGCTAGCCAGTTGGTCAATGTATGGCTTGAAGTTTTTCGCAAGGAAAAAGCTTCTAATGGTGGATTGAAGTTACCAAAACAAACAACTGTCTTAGATTTATCTAAGAGAAAATCTGCAAAAGATTCAGCTTTGGGAAAACCACCTCTGGGCACATATCATGGTACCATTGAGAATAAAGGAGGCTTGCTAAATCCTACCTCTGCTGGAAGCAATTCACCTTCCCATGCCCATGTGAAGAAATTGCAAAGCAAACAAGGAAGACAACCGGCACCATATGACTCAAGGCATGAAGTCAGTTCTTCCAAATCTAAAGGTTCAATAGACAGAGTAGCTACAGAGAAGGAGGATAGCCACTGTGCTATATCTGAAGAAGAACAGGCTGCTATAGCTGCTGCAGAGGCTGCCCGTGCTAAAGCTCTTGCTGCTGCTGAGGCATATGCCTCTGCAGAAGCCAGATGCAATTCTCTGTTACAGCTTCCTAAGATACCCTCATTCCACAAATTTGCTAGACGTGAGCAGTCTTCACAAAATGATGAGTGTGATAGTAGAAAAAGATGGTCAGGTGGTGTTTTTGGAAGGCAAGATTGTATTTCAGAGATTGATTCTAGGAATTGCAGAGTTAGGGATTGGTCTGTTGATTTCTCCGCTGCTTGTGTCAATCTTGATAATTCCAGAATGCCGGTTGATAACCTCTCACAGAGGAGTCATTCAAATGAGATTGCCAGCCATTTGAATTTCAGAGAGCACTCAGGAGAAAGTGTTGCTGGGGACAGCAGTATATATACAAAAGCTTGGATTGACACAGCTGGTGGTGTTGCAATTAAAGATCATCATGCCATAGAGAGATGGCAATCTCAAGCAGCTGCAGCTGATTCTTATTTTTCTAACCCAACTATTCACTTGAAGGACGAGGAGGACTCAAATGCCTGTTCAAAGCTACCGAGTTGGAAGCGTGATGGTGTTGCAAATGAGAGCTCTATTTCACAGGTTACTGTAAATAAGGATGCCCTAAAGAGTCATTCCCGCGCAGCAGATCATATTAAACAGGCTGTTGTGGACTATGTTGCATCACTGCTTATGCCCCTTTATAAGGCAAGAAAACTAGACAAGGATGGATACAAGGCTATAATGAAGAAAAGTGCAACAAAGGTAATGGAGCAAGCCACAGATGCAGAAAAAGCCATGACTGTTCGTGAGTTTCTAGATTTTAAGCGAAAGAATAAGATTCGCTCCTTTGTGGATATATTGATTGAGAGGCACATGACAATGAAATCAGATACGAAATCTTAA	5706	0.4264	MEGEDIRSGTRKKRSKKEIGFDSDDDEPIGSIFKLKRAKRKGSGSGEAVREKEDLGGMDDNDTLASFRKRLKGPKRDQGSGVARGASPALHVSDEDLVGLGAKGKEEKGVALVPGGVDMQMQDSSDQHMEDSLSAIFHKAQSSSARKSRGGSRQKRGIQKVDGGLSPGGFVEAVDSEVESRSGSASGSKLVGGNDALPQASEPVVTSVVEDQKCVNDCFHEEIAKGECDLDIPDGLNQPKDVYHEDGKQFSRALKAEDISCDSDKKVALQESVVISGGLHKLSSMLLDEIVDTASLSKVGEGESQFSEVAEPENRLTGELVQACNSASEHDVSNSSGKGNVLTSWHTELLIKSTENVLKENDDMVSGKGFQESSRNGALKLSGCHMEVDGGGKSETEFVSDRNLCDYSNLDTKAEVQDFVLGFSPKRNDVTVSGSSMVSNEAELDARSNHPEKPIEACNIPIGPPTVSILKCSSVLDPVHSDGSSLQSSIPDENGNSAEYHTSVSDFVDNDGKISGITRVVRKTKMRKHGDMTYEGDADWEVLINDQTLNESQVMTDVDRTLRTRMKHDSSLNTGEESENVAVVAVSAGLKARKAGPIEKIKFKEILKRKGGLKEYLDCRNQILSLWSRDVTRILPLAECGVSDTDSEDGSPRSSLIREVYAFLDQYGYINVGIASQKENVGSSARHCYKLVKEKGFEESLAASMADSEDGVSFLVGQTKMSDTFNEINNGLPKDCNDLTTEAAEGMGHSNEVKLDLSNISQQAEGKKIDYQENDGFQDGTIDSSVPSSNFADCRLTSLVAKEKINDSTCIKSVWGGQVGDNLQSDLDPRKRVIVIGAGPAGLTAARHLQRQGFPVTVLEARGRIGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDIVTEQKVPADMDEALEAEYNTLIDDMVLVVAQKGEQAMRMSLEDGLEYALKIRRMARSESSEETEQNNSADRPFDSKRDSSVEKKLDEEILTPQERRVMDWHFAHLEYGCAASLNDVSLPYWNQDDVYGGFGGAHCMIKGGYSSVVESLGEGNTIHLNHVVTNVSYGIREPGQSYKVKVSTSNGNEFFGDAVLVTVPLGCLKAETIQFSPPLPQWKCSSVQRLGYGVLNKVALEFPSVFWDDAVDYFGATAEERNSRGHCFMFWNVRKTVGAPVLIALVVGKAAIDGQSLSSSDHVKHALKVLRKLFGQDSVPDPVAYVVTDWGRDPFSYGAYSYVKVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLRESVRIIDILSTGNDYIAEVEALEAARGQLDPERDEVRDIIKRLDAVELSNIMYKNSLDGAQILTREALLREMFFNTKTTGGRLHVAKQLLTLSVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKLPKQTTVLDLSKRKSAKDSALGKPPLGTYHGTIENKGGLLNPTSAGSNSPSHAHVKKLQSKQGRQPAPYDSRHEVSSSKSKGSIDRVATEKEDSHCAISEEEQAAIAAAEAARAKALAAAEAYASAEARCNSLLQLPKIPSFHKFARREQSSQNDECDSRKRWSGGVFGRQDCISEIDSRNCRVRDWSVDFSAACVNLDNSRMPVDNLSQRSHSNEIASHLNFREHSGESVAGDSSIYTKAWIDTAGGVAIKDHHAIERWQSQAAAADSYFSNPTIHLKDEEDSNACSKLPSWKRDGVANESSISQVTVNKDALKSHSRAADHIKQAVVDYVASLLMPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKAMTVREFLDFKRKNKIRSFVDILIERHMTMKSDTKS	1901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g00104	1901	MobiDBLite	consensus disorder prediction	1569	1590	-	-
	Phco2g00104	1901	Pfam	Flavin containing amine oxidoreductase	841	1311	IPR002937	GO:0016491
	Phco2g00104	1901	Gene3D	-	939	1266	-	-
	Phco2g00104	1901	MobiDBLite	consensus disorder prediction	1	91	-	-
	Phco2g00104	1901	Pfam	SWIRM domain	594	671	IPR007526	GO:0005515
	Phco2g00104	1901	Gene3D	-	833	1309	IPR036188	-
	Phco2g00104	1901	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	1409	1493	IPR035441	-
	Phco2g00104	1901	SUPERFAMILY	FAD-linked reductases, C-terminal domain	1149	1260	-	-
	Phco2g00104	1901	SUPERFAMILY	FAD/NAD(P)-binding domain	829	1313	IPR036188	-
	Phco2g00104	1901	MobiDBLite	consensus disorder prediction	1507	1590	-	-
	Phco2g00104	1901	MobiDBLite	consensus disorder prediction	982	1012	-	-
	Phco2g00104	1901	SUPERFAMILY	Homeodomain-like	578	676	IPR009057	-
	Phco2g00104	1901	FunFam	Lysine-specific histone demethylase 1A	580	684	-	-
	Phco2g00104	1901	ProSiteProfiles	SWIRM domain profile.	581	681	IPR007526	GO:0005515
	Phco2g00104	1901	PANTHER	FLAVIN MONOAMINE OXIDASE	831	1318	-	-
	Phco2g00104	1901	MobiDBLite	consensus disorder prediction	1	77	-	-
	Phco2g00104	1901	Gene3D	-	580	684	IPR036388	-
	Phco2g00104	1901	MobiDBLite	consensus disorder prediction	139	197	-	-
	Phco2g00104	1901	MobiDBLite	consensus disorder prediction	1532	1551	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g00104	Phco-Chr2	927488	939680	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SWI or SNF-SWI3	Phco2g00104		Amino_oxidase	3.7e-106	CL0063

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g00104	2	927488	939680	Phco2g00104	2	927488	939680	ECH