Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00100 ATGGAAGGTGTTGATCAAAGTAATATGAAACGAAATGGTTGTGTATTTGGTTCATCATCGGGAGCAAATCTCAGACCCCCAAATCGATTGAATAATGCTGTGGCTATTAGTCAAATGGGTGTTGCTGAGAATCAGAAACCCTATGGTATACCACCCTCATACCCTAACACAAATATTTCACCTTCTTCACCCTATCCTCAGTTTTTTGGCTCTCAATCCCATTCCAATTCGGTTTCTCAGCGTTTGGGTTCTCCCAATTTGAGTTCTGCCTCATCCCATTCCAGGTCTTTGTCTCAGCCCCCTTTTTTCTCTCTGGATTCCTTGCCCCCATTGAGTCCTTCTCCTTATAGAGAGGCCTCCCTTTCTGACCCAATTTCAGCAGATGTGTCTGCTGAGGAAAGCTTGGTTAACCCACATGCCCCTTTGCCTAATCGTGGTCCTGCACTTCAGCTTGGCCATTCTCTTCCACCTCGGAAAGGACACAGGCGATCCAGCAGTGATTCCCCTTTGGGAATCTCTGATTTTATTCAGTCTGCCCCTCAGTTGGTTCCCTCCAGGTCTTGGAGTGATCGCGATGGTTCGGCTTCTAGGGGAGGGAACTCGGGTTATGAGAAACCGATTCAGCTAGTGTTAAAGGAACCGATTAAGGATATGGACCGTGCTGATGGTTTTGGTGGGGAACCTATGGTTGGGAGGAAAGAGGATGATGCACTGGATGATTTGTTCAGTGCATACATGAATTTGGACAACATTGATGGTCTGAATTTTTCTGGTATGGAAGATAAGGACTTGGATAGCAGAACCAGTGGTTCCAAGACTGTTGAAAGCAGTGACAACGAAGTTGAGAGTCATGCAAATGGGAAAGCAACCGGTGCTCAAGGGGCTAGTTCAAGCTGTTCAGAGGAGAGAAGGGAAGGAGTGAAGAGGAGTTCTGATGGTGACATTGCACCTGGTTCCCGACACCGGAGAAGTTTCTCATTGGACAGCTCCATTGGAAATTTCCACATTGGAGATGAATCACCTAAGCTTCCTCCTTTGCAAAACCGAGGTGGTCAACACTCTCCTAGCAATTCGATAGATGGTAAGGCTTCTGAAACAAGCATCGAGTTTGGAAATGGTGAATTCAGCTCAGAGGAGCTAAAGAAAATAAAGGAGAATGATAAACTTGCTGAAATTGCCATGGCTGATCCTAAACGTGCAAAAAGGATTTTGGCGAATCGGCTATCTGCTGCTCGCTCAAAAGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTGAAAGTCCAAACACTTCAGACAGAGACAACCACATTGTCTACTCAATTTACCAAATTACAGATGGATAATTCAGAGCTTAAAAGTGAGAATAATGAGTACAAATTGAGGATTCAAGCCTTCGAGCAGCAGTCCCAACTGAAAGATGCTCTGAATGAGACTTTGGATGCCGAAGTGCGGCGTTTAAGACGCATGGTTGCAGAACTTGGCGGAGAGACCCTCCTCTCGAGTCGCATGGCTCAACAGCTTGCTATTAGCCAACAAATGTTCCCAGTACAGCAGCACCCTAACCAGCTTAGACATGCTCAACTGCACAATAGCCATTCCCAGGAACAGACACAGACTCAGTCACAGCGCCAGAATGGCAAAGCAACAGCCTACTGA 1659 0.4623 MEGVDQSNMKRNGCVFGSSSGANLRPPNRLNNAVAISQMGVAENQKPYGIPPSYPNTNISPSSPYPQFFGSQSHSNSVSQRLGSPNLSSASSHSRSLSQPPFFSLDSLPPLSPSPYREASLSDPISADVSAEESLVNPHAPLPNRGPALQLGHSLPPRKGHRRSSSDSPLGISDFIQSAPQLVPSRSWSDRDGSASRGGNSGYEKPIQLVLKEPIKDMDRADGFGGEPMVGRKEDDALDDLFSAYMNLDNIDGLNFSGMEDKDLDSRTSGSKTVESSDNEVESHANGKATGAQGASSSCSEERREGVKRSSDGDIAPGSRHRRSFSLDSSIGNFHIGDESPKLPPLQNRGGQHSPSNSIDGKASETSIEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSENNEYKLRIQAFEQQSQLKDALNETLDAEVRRLRRMVAELGGETLLSSRMAQQLAISQQMFPVQQHPNQLRHAQLHNSHSQEQTQTQSQRQNGKATAY 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00100 552 SUPERFAMILY Leucine zipper domain 398 453 IPR046347 GO:0003700|GO:0006355
Phco2g00100 552 MobiDBLite consensus disorder prediction 301 321 - -
Phco2g00100 552 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 92 546 - -
Phco2g00100 552 Coils Coil 442 469 - -
Phco2g00100 552 Coils Coil 473 497 - -
Phco2g00100 552 MobiDBLite consensus disorder prediction 283 300 - -
Phco2g00100 552 Gene3D - 396 458 - -
Phco2g00100 552 MobiDBLite consensus disorder prediction 1 29 - -
Phco2g00100 552 SMART brlzneu 394 458 IPR004827 GO:0003700|GO:0006355
Phco2g00100 552 MobiDBLite consensus disorder prediction 50 101 - -
Phco2g00100 552 Coils Coil 414 434 - -
Phco2g00100 552 MobiDBLite consensus disorder prediction 44 101 - -
Phco2g00100 552 Pfam bZIP transcription factor 398 456 IPR004827 GO:0003700|GO:0006355
Phco2g00100 552 CDD bZIP_plant_RF2 399 471 IPR044759 GO:0003700|GO:0006355
Phco2g00100 552 MobiDBLite consensus disorder prediction 166 196 - -
Phco2g00100 552 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 396 459 IPR004827 GO:0003700|GO:0006355
Phco2g00100 552 MobiDBLite consensus disorder prediction 527 552 - -
Phco2g00100 552 MobiDBLite consensus disorder prediction 347 364 - -
Phco2g00100 552 MobiDBLite consensus disorder prediction 114 206 - -
Phco2g00100 552 MobiDBLite consensus disorder prediction 11 29 - -
Phco2g00100 552 MobiDBLite consensus disorder prediction 262 364 - -
Phco2g00100 552 FunFam Transcription factor VIP1 isoform A 396 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00100 Phco-Chr2 899909 902701 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco2g00100 bZIP_1 1.9e-10 CL0018