Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00095 ATGATGGCTTCCGTAGAAGAAAAGGTTAAAACTGGAGGAGCTGGAGCCGGAGCCGGAGCCGGAGGGGGAATGGTTGTTGGGGGTCAAACTTTAGTGGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTCCGGGGTCAGAAAGAATTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTTTCATTACCTCAGGTTGGAAGTCTTGTGTTTTACTTTCCTCAGGGACACAGTGAGCAGGTGGCGGCTTCTACTAGAAGAACAGCAACGTCGCAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTCCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAGCCACTGAATTCTGAAAGAGAAGCCTTTCCCATATCTGATTTTGGGCTAAAGCACAGCAAACACCCCACTGAATTCTTCTGCAAAACTTTGACTGCCAGTGACACGAGCACACACGGTGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTATTTCCTCCATTGGATTATACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATTTACAGGGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGACTCAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAAAAATCGCAATTGCGAGTTGGTGTGAGGCGTGTTAATCGTCAACAAACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCAGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCTTGTCCTTCAGAATTTGTAATCCCGCTGGCTAAATACAGAAAAGCTGTATTAGGGACTCAGGTCTCGGTTGGCATGAGATTTGGCATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGATGTGGATCCTCTGAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAACAGAATAGAGTTAGTGTTTGGGAGATTGAGACTCCAGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTGAAACGGCCATTGCAAACTGGATTTTATGAAAATGAGTGGGGAACCTTGTTAAGAAGACCTTTTATGAGAGTTCCAGAAAATGGAACTATGGAGCTCTCAAACCCAATGCCAAATCTCTACTCAGACCAGCTGATGAAAATGCTTTTTAAACCCCAGATTATTAACAACAATGGAGCATTGTTATCTGCCATGCAACAAGAATCTGCTGCTACAAGAAGTCCCTTTCAAGAGATGAAGACAGCACTTGCAGTAGAGAACATGCCGCTTAGAAATAATCCACACACTCAATCTATCCCTGACCAACCCAATCTCTTAAACATGCAATCTCTTTTGAGAAGTGAACAACCTGAAAAGTTGCATGCTCTTGCCAAAATTGAGCTGCCTTCTGGGATAGTTACTGACAAGCCTAAATTAGAACCTGAGGTATTACCTGATCATATGATTGACTATCCTTCCATGGAAGGGTGCAACATTGAAAAGGTGGCAACAAATCCTGTTAACCAGCAAGGCCTAGCAAACCAGTTGACGTTCCATAATCAAAACCAGACTCCTCTCACTCAATCTAGTCCATGGCCTATGCAACCTCAGCTAGAATCATCCATGCCCCATCCTCAAATGATTGACATGACTCAAGCTGAAACTACTATGGTGAATACCCTTCTTCCTCAGCTAGACATTGATGAATGGATGGCGTATGCTTCCTCCCAACCTTTTGCCGCGCCAAACAGACCAACTGGACCTTTATCTGACTTGCAAGAACAGGCTTCACTTCAACCTCAAGTGGTGAATCACCCTTTACCTAATCATGAAGTGTGGGATCATTATGTCAAGAGTTTGAAGTTTTTGTCTCAAACAGACCAGCTAACCTCCATCTGTCAGCCAGGGACTTACGGCCTCAATGGCATGTCAAGTCCAAACAGTTTGAGGGACCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAACGTTGATGTTAGCAACAGTGTAGGTACCACCGTGGTTAATCCTTCTACTTCAAACACCATTTTGGATGAGTTTTGCGCAATGAAGGAGAGAGAGTTTCAGAATCCAAATGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTGCAATCTCAAATAACCTCGGCAAGTCTAGCTGAGTCACACGCCTTTTCTCTTAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTACAGAATAACTCGTGGCAGCAAGTACCTGCTCCCATCCGAACCTACACAAAGGTGCAAAAGGCCGGTTCTGTAGGAAGATCAATTGACGTCACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTAGATGGTCTGCTGAATGACACTAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGCTGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTGAACAGTGGAGCTTTACAAGGGATGAATGTTTGA 2805 0.4435 MMASVEEKVKTGGAGAGAGAGGGMVVGGQTLVAEMKLLKEMQEHSGVRKNLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEREAFPISDFGLKHSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVLGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQTGFYENEWGTLLRRPFMRVPENGTMELSNPMPNLYSDQLMKMLFKPQIINNNGALLSAMQQESAATRSPFQEMKTALAVENMPLRNNPHTQSIPDQPNLLNMQSLLRSEQPEKLHALAKIELPSGIVTDKPKLEPEVLPDHMIDYPSMEGCNIEKVATNPVNQQGLANQLTFHNQNQTPLTQSSPWPMQPQLESSMPHPQMIDMTQAETTMVNTLLPQLDIDEWMAYASSQPFAAPNRPTGPLSDLQEQASLQPQVVNHPLPNHEVWDHYVKSLKFLSQTDQLTSICQPGTYGLNGMSSPNSLRDLSAESNNQSEICVNVDVSNSVGTTVVNPSTSNTILDEFCAMKEREFQNPNDCMVGNLSSSQDVQSQITSASLAESHAFSLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00095 934 Pfam AUX/IAA family 826 915 IPR033389 -
Phco2g00095 934 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Phco2g00095 934 FunFam Auxin response factor 155 259 - -
Phco2g00095 934 ProSiteProfiles PB1 domain profile. 828 912 IPR000270 GO:0005515
Phco2g00095 934 FunFam Auxin response factor 321 393 - -
Phco2g00095 934 CDD B3_DNA 156 257 IPR003340 GO:0003677
Phco2g00095 934 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 918 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco2g00095 934 SUPERFAMILY CAD & PB1 domains 830 907 - -
Phco2g00095 934 FunFam Auxin response factor 824 917 - -
Phco2g00095 934 Pfam Auxin response factor 283 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco2g00095 934 Gene3D - 321 393 - -
Phco2g00095 934 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Phco2g00095 934 Gene3D - 825 917 - -
Phco2g00095 934 SMART B3_2 157 259 IPR003340 GO:0003677
Phco2g00095 934 SUPERFAMILY DNA-binding pseudobarrel domain 145 286 IPR015300 -
Phco2g00095 934 Gene3D - 154 258 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00095 Phco-Chr2 858788 863222 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco2g00095 AUX_IAA 6e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00095 2 858788 863222 Phco2g00095 2 858788 863222 ECH