Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00090 ATGGGAGTCCCAGCTTTCTACCGGTGGCTGGCTGAGAAGTATCCGATGGTGATTGTGGATGCGATTGAGGAGGAAGCTGTCGTCATCGATGGGATTCAAATCCCGGTCGATACGAGCAAAGAGAACCCTAACAACATCGAATACGACAACCTCTACCTCGACATGAATGGCATCATTCATCCCTGCTTCCACCCCGAGGATAGGCCTTCTCCGACTTCGTTCGATGAGGTGTTTGAGTGCATGTTCGACTACATTGACAGGTTGTTTGTTATGGTGCGGCCACGGAAGCTGCTCTACATGGCTATTGATGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGGCTGCGAAAGATGCAGCTGACGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCTAAAGGAGAGTCACAGACTTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAACATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAAAGGTTTTGATCCAAATACACGACATTGCCTATATGGTTTGGATGCCGATTTGATTATGTTGGCATTGGCTACCCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGCCATATGGCAGCAAACTGTGAAGGAAAGGCAAAAAAGAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTATCGTGACTAAAAAACCATACCAGTTCCTGAATATTTGGACTCTCAGAGAATATCTGGAGTATGAGATGAGAATACCTAATCCCCCTTTCGAGTTTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGCTTTTTCGTCGGCAATGATTTTCTTCCACATATGCCTACCCTAGAGATCCGTGAGGGTGCAATCAACTTGCTGATAGCAGTATACAAGAAGGAATTTAGGGAATTTGGTGGTTATTTAACCAATGGTAGCATGATAAATTTGAGCAGAGTGGAGCACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAACGGAAAGAATAAAGCGTGAAAAGGCACAGGCAAGAAGGGGAGATGATACTGAGCCTCAGTTTCAACCAGAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAACACCATCGCCATTTCAGCAATCTGGGCATTATAATTCTCAAGTGTCCTCATCAGTTAGAAAATATGATAAAGAAACCTCTCAGAGGCCTCAGAAAGTTGCTAGGTTATCTTCAGGAGCAACTCTTGCTGCTGCTATTGTTGAAGCTGAGAGTAGTGTTGAAATAGAAGCACAAGATAATAAAGATGAATTGAAAACAAAATTGAAGGAGATACTTCGTGAGAAATCTGATGTATTCAACTCAAAAAATGCTGAAGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTAAAACTCCTGAGGAACTTGAAGCTATACGGAAAGATGTTGTCTTGAAGTACACTGAAGGCTTATGTTGGGTTATGCGCTATTATTATGAAGGTGTTTGTTCTTGGAATTGGTTTTATCCATATCACTATGCCCCTTTTGCGTCTGATCTCAAGGACCTTGGTGAACTTGATATTAGCTTTAAGCTGGGTACACCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCAAGCTCTCATGCTCTTCCTGAGCCGTATAGGAGACTTATGTCAGAACCAAACTCACCTATCATTGATTTTTATCCTGTTGACTTTGAAGTCGACATGAATGGAAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTACCTTTTATTGATGAAGCGCGTCTTCTTGCAGAAGTTCAGAAGATTGAAAATTTTTTAACACCAGAGGAGAAGAGACGGAATGCTATAATGTTCGATTTGCTCTTTGTGAATTCTTGTCACCCTCTCTCTGCATGCATAAGTACACTGGACAATAAGTGTAAAAACATGTCAAACAGTGAACGGGCTGTGGTGAAGGAAAAAATCAATCCCAATGAAAGGGATACGTGCAGTGGTGGAATGAATGGTTATATATCTTTATGTGGTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGATATCATGGACAATCAAGTTATATGCGCAATATATAGACTCCCAGATGCTCATGAACATATTACCCGACCACCACAAGGAGTTAAATTTCCTATTAAGACTGTTACCATTGGGGATCTAAAACCTGAACCAGTTTTATGGCATGAAGATTCAGGTAGGAGACACCATGCTGAAAATGGGAGGGGAAACCCTCCAGGTTCTTCTGGTCGGGAGCTTGGAGAGGCTGCACACAGATTCATTGTCAATTCCCTACAGGCGAAGGTCGACTCCAATGGCTACCGTCACCCACATAATGGACCTCCTATATCTTATCCTGCACCAATGGGTCATCGACCACCGGTGTCTTCCTATGGTTATGAATCACACCCAGGATACGTTGCAATGCCATCTGTTTCTGCTCCCTCACTCCAAGGCAGACCCCAGTTTGCACCTTACAATGCTGTCCCTACTGCTCAGCAGTATGGTTATAATCAACAATACCTGCCATCCCCGGTACCATACAATCCTCATCAGCCATCAAATGACTATCAACACCCTGCATCTCATCATTATGAAAGAAATCACCATCAAGGTAGTGGGGGTAGTTTAAGGCATGGCTATCAATCGTCAGGATATAATCAGAATGCCAGGTTTATGAATAATAATACCCAAGGTGCATATGGTAGTCACCAACATGATGTTATTCACCACAACCCAAACTTTCAACCATCTAGAACCCATCAGAATTGGACTCCACGAAACAACCAGAGTGGAAACAGGGAATATGGTCATCATTCCTCCAATCAATTTTCTTTATTAGATAGAAGAGGAAACAGGAATCCAATGCCACCACCTGGTTACGATCACAACTAA 3219 0.4284 MGVPAFYRWLAEKYPMVIVDAIEEEAVVIDGIQIPVDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLPPKGESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKKKAGEFDEKGEAIVTKKPYQFLNIWTLREYLEYEMRIPNPPFEFDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFREFGGYLTNGSMINLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARRGDDTEPQFQPESLVAVSRFHGSRLASAPTPSPFQQSGHYNSQVSSSVRKYDKETSQRPQKVARLSSGATLAAAIVEAESSVEIEAQDNKDELKTKLKEILREKSDVFNSKNAEEDKIKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMRYYYEGVCSWNWFYPYHYAPFASDLKDLGELDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRRLMSEPNSPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIENFLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMSNSERAVVKEKINPNERDTCSGGMNGYISLCGGEPCPPIFRSPVASMEDIMDNQVICAIYRLPDAHEHITRPPQGVKFPIKTVTIGDLKPEPVLWHEDSGRRHHAENGRGNPPGSSGRELGEAAHRFIVNSLQAKVDSNGYRHPHNGPPISYPAPMGHRPPVSSYGYESHPGYVAMPSVSAPSLQGRPQFAPYNAVPTAQQYGYNQQYLPSPVPYNPHQPSNDYQHPASHHYERNHHQGSGGSLRHGYQSSGYNQNARFMNNNTQGAYGSHQHDVIHHNPNFQPSRTHQNWTPRNNQSGNREYGHHSSNQFSLLDRRGNRNPMPPPGYDHN 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00090 1072 FunFam 5'-3' exoribonuclease 149 372 - -
Phco2g00090 1072 PANTHER 5'->3' EXORIBONUCLEASE 1 1022 IPR027073 -
Phco2g00090 1072 FunFam 5'-3' exoribonuclease 1 136 - -
Phco2g00090 1072 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Phco2g00090 1072 MobiDBLite consensus disorder prediction 983 1057 - -
Phco2g00090 1072 MobiDBLite consensus disorder prediction 413 437 - -
Phco2g00090 1072 CDD PIN_XRN1-2-like 51 312 - -
Phco2g00090 1072 MobiDBLite consensus disorder prediction 840 860 - -
Phco2g00090 1072 MobiDBLite consensus disorder prediction 453 475 - -
Phco2g00090 1072 MobiDBLite consensus disorder prediction 948 1072 - -
Phco2g00090 1072 Gene3D - 1 137 - -
Phco2g00090 1072 Gene3D - 147 383 - -
Phco2g00090 1072 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Phco2g00090 1072 PIRSF Exonuclease_Xrn2 1 1057 IPR017151 GO:0004534|GO:0005634|GO:0006139
Phco2g00090 1072 MobiDBLite consensus disorder prediction 948 967 - -
Phco2g00090 1072 Gene3D - 612 714 - -
Phco2g00090 1072 MobiDBLite consensus disorder prediction 413 432 - -
Phco2g00090 1072 Pfam Xrn1 helical domain 325 828 IPR041412 -
Phco2g00090 1072 MobiDBLite consensus disorder prediction 449 489 - -
Phco2g00090 1072 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Phco2g00090 1072 Coils Coil 122 142 - -
Phco2g00090 1072 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Phco2g00090 1072 Coils Coil 508 528 - -
Phco2g00090 1072 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Phco2g00090 1072 FunFam 5'-3' exoribonuclease 614 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00090 Phco-Chr2 787827 801790 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00090 2 787827 801790 Phco2g00090 2 787827 801790 ECH