Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00072 ATGATGGCGCTAAGCAAGTTTTTCAACTGGAACACTCTTCAAATTCCTGATTCAGAAACAAGCACCTTTAACGAAGACATGCCAGAAGAAGTGGCACCAAATATCCAGCACTTGTTTGATGAAAGCTTTTTCCTTTCAAATACCCTTTTTGAGAACTACATTGACCCAAATGCTGCTTTTCTCTATCCTTCAGATGTTCAGTCTCCTTTTGATCCTTTCATTGCACTCCCTCATCACCCCATCTTCCCAACTCATGAAGATTACAATCATTTCCCGTGCTCAAAACGCCAAAAGTTCTGCTGTGAGGAACAACAGGTACTACAACATTCACAGGAGCTTACAACACCAACAATACCTTCCAATCATATAGATGAGTTTGGTAATTATTACTCTTTTCAATCTGAAGAGAGACAACAACAATTATTTTGCATGGATGCTCAATGTGAGGAGAATGGCAAGGAAAGAACCATATCTCCACAGAGCGTTGCCGCAAGAGAAAGAAGAAGAAAGATTACGAATAAGACTCAAGAGCTTGGTAAGTTGGTTCCTGGTGGAACAAAAATGAACACAGCTGATATGCTAAATGCAGCTGCAAAGTATGTTAAGTTCCTTCAAGCCCAAGTTGGAATGCTTGAACTCATGAACTCACTCGAGCAAGAAGATGAAGCAGCACCTCCTTCTGAAATTCTACATGCTTTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCGGGGGAAAAGTGTTTTTTGTCAAAAGAAATTGTCACCACTTTGACAAATCTTGAAGATATTCAATCAAGACCTACCATGCTTGAGGAACTTAAACAGCACATTGGAACAGACCTTAAGAAACCAAAACAATAA 867 0.3968 MMALSKFFNWNTLQIPDSETSTFNEDMPEEVAPNIQHLFDESFFLSNTLFENYIDPNAAFLYPSDVQSPFDPFIALPHHPIFPTHEDYNHFPCSKRQKFCCEEQQVLQHSQELTTPTIPSNHIDEFGNYYSFQSEERQQQLFCMDAQCEENGKERTISPQSVAARERRRKITNKTQELGKLVPGGTKMNTADMLNAAAKYVKFLQAQVGMLELMNSLEQEDEAAPPSEILHALVVSPFVQEKLYAGEKCFLSKEIVTTLTNLEDIQSRPTMLEELKQHIGTDLKKPKQ 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00072 288 Pfam Helix-loop-helix DNA-binding domain 165 205 IPR011598 GO:0046983
Phco2g00072 288 Gene3D - 153 224 IPR036638 GO:0046983
Phco2g00072 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 215 IPR036638 GO:0046983
Phco2g00072 288 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 158 249 IPR045843 GO:0003700|GO:0006355
Phco2g00072 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Phco2g00072 288 SMART finulus 161 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00072 Phco-Chr2 692447 693725 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g00072 HLH 2.8e-06 No_clan