Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00063 ATGACTCTTGAAGATTTCTTTACGTTGACTGAAATGAAAGATGGCCTCACGGCCCCTTCTCGAGTGCAAGAATTGGTCTCTGTAATGAAGAAGGAGCAAGATCGTGTTGTTAAAAATGCTGGTGATGCGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTGTTCAATCAGATGGACTTTGGTTCATCAACAGATGGTTAATGGATGCCCAAAATTTGGGTGCTGATAATACAAATGATGGCTTCATTGAAGAGTCAATTACTGCAATGTTACGAGCAGTTGAAAAACTATATCTAGACAGTGAAAAGTCAATTTCATCCGGAATATCGGTAACTGTTAATAACCTTCTTGGCCATCACAGCTCTAAAGTGCAGGATAGAGCAAGAGCATTATTTGAGCACTGGAAAGGAGGTGGACTTGGAGATGGTGAACCTCATGATAATTCAGATCTTGATAGACTCAACAATGAGAGTGATAAGATTGTCAGGGAGGAAGGCCAGCCATCTTGTGTGAATGAAGCTGGCAATGACAATCATCATCCATCTCAGCTTGCTGGAGATGAGAAGTCTCTATCGGAAGGCTCAAATAGTCAGCTACAAGAGAAAGTTTCTAGTATTCAGATACAGAGTATTGACAATGCACTTCAGTCCTCTGTAAGTTTGGATTGTGAAGTTATCAAAGAGAAATCAAGCCATGTTAATAGTGTTTTGGCTTCTGCTCAAGAATCTACCTTACATGAAGGTGAGACCACATTGGCTGGGACGTGTAGCTTACCTATTACTAAACAAGGCAGTTTCAAAGGACAAGAAGATGATTTACAGTTAAGTGACTTGTCCAAAAAGGAGAAGCAAGATCAAGATGTTAATGGTCCTCCCGAAGAATTAAGATCATCAGATATCTCTTCTGCATCTGCAAAGCCAGATCCTGAACCTGCTTCCACTGGTGATAGTGAAGCAAAAGCACTGGAATCTGTGAAAGAAGAACCTGCTTTAGAACATAATGTTGAAAGCAATGAAAAAGTTGTTTTTCCCAAAATAAGTGTTTCTGGTAGCATGAGAACGCCTGAATCTGATGGAATGAGTGAGATGGATGATTTCAGAGCTACAAGCTCTAGCAATCCACAACTTCCCAAAGCATCAGAAACTGATGATGACAGTTGTTCAAAAATGTTTCCTGACTTATCTGTCACTGGAAGTAACTTGGAAAAGCCTGAGATGTCTTTCATCAAATCAGAATACATCAGAGCAGTAAAGGAAAGCAAGGACCAGGAGTCTGATCAAGATGATGATACATCAAATGGTTCTGATTCTTTTAATCAGGGCAAAGGTCCCAGAAGCCCTAACATTAATGACAAGAGTTCTGACATGGAAATTGAATACGGTAATGTGGATGCTTTAGAAGTTGCTCGACTAGTTGCTCAAGAAGTTGAGAGAGAATGTGTCAGCCCTGTAAAGGAAGGGAATGACCATGGTTCTGATTCTTTTAAATGGCGAAATGGTCCCAAAAGCCCTAATGTTATTGGCAAGAGTTGTGAAATTGAACTTGAGTATGGTATGGTTGATGCTTTAGAAGTTGCCCGACAAGTTGCTCAGGAGGTTGAGAGAGAAGTTTCCAGCTCTTCAGAGAAAATCTCCGAAGGTGGAATTAGGAAGAGAGGCAGCCTTGATTCTGTAGGGAGAAAGGATGAGATTACTCGAATGCTGCCTGAGGAAGTATCATCCAGGCAAAGCAACTCTGCTGAAGTGTGTTCCGAAGAGGTCGGACATATGACTGTTTCAGATAATGTCGAGGCCGGGCCAGATGACTTGGACTCCTCGCAGGTAACTGAAGCAGCTCAAGACCCAGGAGGTAATTCAGAGAAAAGTCTCTGTACCTTTGATCTCAATGAAGAAGTTGTTTCTGATGATATGGATGTTTCTGTAAATGCTATGTCTACTGTGCCAATACCTGTTGTCTCTGCTTCAAAACCTGCTCAGTCTTCTGGGTTACCAATGGCCCCTTTGCAGTTTGAGGGGACCCTCGGATGGAAAGGATCAGCTGCCACCAGTGCCTTTCGTCGTGCATCACCTCGTAGAAATTCTGATGGCGAGAAGAATGTTTCTGTTGGTAGAAACTCAGAGATTTCCAAGCAGAGGCATTGTTGCCTTGATTTTGATCTGAATGTGGCTGAAGGTGAAGAAGGATTGGTAAAACAAATTGGTGAATCTTCAGGCCTTCCTTCTGGTCAATCATCAGTGGAACTTAGTCCTAAAAGATCAAACCGATTCGAATTGGATTTAAACAGTATTGGTGATGATGGTGATGCCCAACCTTCAGATCAGAGGATGGAGGGCCCACCCTTTTCCGGAAGAAATGGTTATTGGAGTCCATCACCTGCTTCTTCATCGTCATCAATGCAACCTTCAGTACGGAACATTGATTTGAATGACAGACCATACTTTCAAACGGATTTAGTGGAGTCATCTTCTATTATTGAAGCATGTAAACGGTCTAAATTGGATGCTTCTGTGATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAATATGTTCCTCAAACTTTGTCGTTACCAAATGGCAAGGCTATTGAGCCAGCAATGGATCATCCATTGTCAGGAGCAGGTGGCATTTTAGGAATGGGTCCCCCACTATCCTACAATCATTCAAATGCTTTTGGGTATAATGGACTGACATCAGTGCCTGCTTTGTCTTTTTCATCAGCCATGTATGGACCTTCTGGTGGCCCAATTCCGTACATGGTAGACTCGAGAGGAACTCCAGTTATGCCTCAGGTTGGGGGATCTTCCTCTACCGTCCTCTCATCTTATACTCAGCCTCCATTTATCGTAAGCATGACTAGAACGCAGCTTGGTTTAAATGGGGTTGGATCTTCACATCCCAACTTTGATCTAAACTCTGGCTTCACGATTGATGGCCCCAACAGAGACATGTTGACTGCAAGGCAATTTTTCTTTCCTGCTCAAGGCAGGGCTATTGAGGAGCATGTAAGGACCCTTCCACAATCCTCTAGTTCTGGGGTTAGTGTGAAAAGAAAGGAACCAGACGGTGCCTGGGAAACCTATCCACGTAGCTACAAACATCAGCAACCTCCATGGAAATAA 3165 0.4284 MTLEDFFTLTEMKDGLTAPSRVQELVSVMKKEQDRVVKNAGDATRQWAAVASTIAATENKDCLDLFVQSDGLWFINRWLMDAQNLGADNTNDGFIEESITAMLRAVEKLYLDSEKSISSGISVTVNNLLGHHSSKVQDRARALFEHWKGGGLGDGEPHDNSDLDRLNNESDKIVREEGQPSCVNEAGNDNHHPSQLAGDEKSLSEGSNSQLQEKVSSIQIQSIDNALQSSVSLDCEVIKEKSSHVNSVLASAQESTLHEGETTLAGTCSLPITKQGSFKGQEDDLQLSDLSKKEKQDQDVNGPPEELRSSDISSASAKPDPEPASTGDSEAKALESVKEEPALEHNVESNEKVVFPKISVSGSMRTPESDGMSEMDDFRATSSSNPQLPKASETDDDSCSKMFPDLSVTGSNLEKPEMSFIKSEYIRAVKESKDQESDQDDDTSNGSDSFNQGKGPRSPNINDKSSDMEIEYGNVDALEVARLVAQEVERECVSPVKEGNDHGSDSFKWRNGPKSPNVIGKSCEIELEYGMVDALEVARQVAQEVEREVSSSSEKISEGGIRKRGSLDSVGRKDEITRMLPEEVSSRQSNSAEVCSEEVGHMTVSDNVEAGPDDLDSSQVTEAAQDPGGNSEKSLCTFDLNEEVVSDDMDVSVNAMSTVPIPVVSASKPAQSSGLPMAPLQFEGTLGWKGSAATSAFRRASPRRNSDGEKNVSVGRNSEISKQRHCCLDFDLNVAEGEEGLVKQIGESSGLPSGQSSVELSPKRSNRFELDLNSIGDDGDAQPSDQRMEGPPFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVESSSIIEACKRSKLDASVISILGAKVEVGRREYVPQTLSLPNGKAIEPAMDHPLSGAGGILGMGPPLSYNHSNAFGYNGLTSVPALSFSSAMYGPSGGPIPYMVDSRGTPVMPQVGGSSSTVLSSYTQPPFIVSMTRTQLGLNGVGSSHPNFDLNSGFTIDGPNRDMLTARQFFFPAQGRAIEEHVRTLPQSSSSGVSVKRKEPDGAWETYPRSYKHQQPPWK 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00063 1054 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 150 IPR035441 -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 376 393 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 612 633 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 1018 1054 - -
Phco2g00063 1054 Pfam TFIIS helical bundle-like domain 102 148 IPR017923 -
Phco2g00063 1054 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 500 1054 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 332 351 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 549 581 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 770 816 - -
Phco2g00063 1054 ProSiteProfiles TFIIS N-terminal domain profile. 80 154 IPR017923 -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 799 816 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 494 508 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 291 469 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 444 467 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 549 592 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 181 210 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 694 717 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 494 515 - -
Phco2g00063 1054 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 149 IPR035441 -
Phco2g00063 1054 Coils Coil 535 555 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 606 633 - -
Phco2g00063 1054 MobiDBLite consensus disorder prediction 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00063 Phco-Chr2 641788 644952 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco2g00063 Med26 5.8e-05 No_clan