Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00046 ATGGTTACCACTGCCAAATCTTCCAACCATCACTCCTCCACTACTCCTCCCTCCCACCTCCACCCTGCCGATGCCAACTTCCCGCCAAAAAACCTTCCCTCGCCCTGGGCTCAAGTCGTTCGCGGTGGCGACCCCGAATCGCCGCCTGCCATTCACCAATCGCCGCCCTCTACGTCATCCTCCTCCTCATCACTGATTAACGAACATCCCCCGTCCTCCGACAATTCTCCCAAGGTCATTCCGGCGTCGCCGCCGCTGGACAATTCTAACACGGTTGGTGTTGCAGATAGCTCTGATGCTGCCGAGGACAATGCTGATCTTTCTAAGAAACCCGTTTGGAATAAGCCCTCAAACGGCGTCGTCGTGGAGACTGGCCCTGTAATGGGCGCTGAATCGTGGCCCGCTCTGTCTGCATCCACCAAAGCTTCTGTTAAATTGCCAGCTGAATCGCCGTCCAAGACCGTTGCTGATGGATCACTCTCAACTTCTCAGGGGCAAATGACTTCACAGTCTTCTCAGAAACCACCTACTGTTACTAATGCAAAACCTAATCCTGCAACAAATTATAATGTGCCTGGTAGACAAAGATCGATGAAGCGGGTAGGTGGTAGTGGCATTGTGTCTGGTCCTTCTCAGAGCAACTTCTCCAATCCTCCTCCACCACCGCCACCACCACCTTTTCCTGTATACCAGCTCCCACCAGTTAGCTATGGTATGGTACCTGTGGTACCTGAGCCTGCTCCAAGAGATCATTACCGTAATAGTAACTGGGATCATAGACCAATGGTGGGGGGTTTTGTGCCTGGGATGAATGAATATCGTGGTTCATCTCACAGGAGTTATTTTGGGCCTGATCCACGAGGAGATGGTTCCTATCATAGTAGCTACGGTAGCAGGCATGATCATGATCGTCGAAATTATGGGAATACCAGAGACACTTTTGTACCTCAACCGAGGATGCCTCCTAGAGGATTACTGAGGCACCCACCTCCTAGCTCTGCTGCTTTTGTGGGCCATCAGCCCATTGGACCATTTGCTAACCCCATGGGTTTTTCTGAGTTTTATTACTATCAGCCAGTGACAATGGAGCAGTTTACTGGTATGCCTTACTTCACGCCCAGCCCTCCTCCTACAACACTCTTTTCTGCTGCTGAATCTCCTCTCTCCAATATGATAGTCCGCCAAATCGAATATTACTTTAGTGATGCTAATTTAGTGAGAGATGAGTTTTTAAGGTCTAAAATGGATGACCAGGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTTAAAAGTCTTACAACTAATGTTCAGTTGATACTAGATTCTATGAGAACTTCCACAGTAGTGGAAGTGCTGGGTGACAAGTTGAGAAGACATAATGAGTGGATGAAATGGGTGTCCTCTACTAAAAGACGGTCTGGATCTACTTCCACTTCGCCGTCTCCCCGTGGATCAAGATCCAATAACTTGACAGCTAATTTTCAAGCTATAACCCTGGAAGAAACAGCAGAGTCATGTAGTCTGCCTCAACTCCCCAATGGTGGTGCTGACGGAAGTAGCACTTAA 1575 0.4902 MVTTAKSSNHHSSTTPPSHLHPADANFPPKNLPSPWAQVVRGGDPESPPAIHQSPPSTSSSSSSLINEHPPSSDNSPKVIPASPPLDNSNTVGVADSSDAAEDNADLSKKPVWNKPSNGVVVETGPVMGAESWPALSASTKASVKLPAESPSKTVADGSLSTSQGQMTSQSSQKPPTVTNAKPNPATNYNVPGRQRSMKRVGGSGIVSGPSQSNFSNPPPPPPPPPFPVYQLPPVSYGMVPVVPEPAPRDHYRNSNWDHRPMVGGFVPGMNEYRGSSHRSYFGPDPRGDGSYHSSYGSRHDHDRRNYGNTRDTFVPQPRMPPRGLLRHPPPSSAAFVGHQPIGPFANPMGFSEFYYYQPVTMEQFTGMPYFTPSPPPTTLFSAAESPLSNMIVRQIEYYFSDANLVRDEFLRSKMDDQGWVPVTLIADFPRVKSLTTNVQLILDSMRTSTVVEVLGDKLRRHNEWMKWVSSTKRRSGSTSTSPSPRGSRSNNLTANFQAITLEETAESCSLPQLPNGGADGSST 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00046 524 ProSiteProfiles La-type HTH domain profile. 382 471 IPR006630 -
Phco2g00046 524 MobiDBLite consensus disorder prediction 1 20 - -
Phco2g00046 524 CDD LAM 390 461 - -
Phco2g00046 524 PANTHER LUPUS LA PROTEIN-RELATED 130 473 IPR045180 -
Phco2g00046 524 FunFam la-related protein 1B isoform X2 378 468 - -
Phco2g00046 524 SMART la 386 462 IPR006630 -
Phco2g00046 524 MobiDBLite consensus disorder prediction 53 76 - -
Phco2g00046 524 Pfam La domain 392 447 IPR006630 -
Phco2g00046 524 SUPERFAMILY "Winged helix" DNA-binding domain 383 470 IPR036390 -
Phco2g00046 524 Gene3D - 381 472 IPR036388 -
Phco2g00046 524 MobiDBLite consensus disorder prediction 294 309 - -
Phco2g00046 524 MobiDBLite consensus disorder prediction 137 225 - -
Phco2g00046 524 MobiDBLite consensus disorder prediction 470 492 - -
Phco2g00046 524 MobiDBLite consensus disorder prediction 286 321 - -
Phco2g00046 524 MobiDBLite consensus disorder prediction 82 97 - -
Phco2g00046 524 MobiDBLite consensus disorder prediction 1 124 - -
Phco2g00046 524 MobiDBLite consensus disorder prediction 154 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00046 Phco-Chr2 532811 536719 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00046 2 532811 536719 Phco2g00046 2 532811 536719 ECH
Phco2g00046 2 532811 536719 Phco7g00259 7 1797001 1800602 PCT