Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00041 ATGAGTGAAGACGTGGAAATGAAAGATCAGGCAACGCCTTCACACTTGGTTTCTTCAGCTCTTCCATCTACATTGCAACATTTGAAGGAAATATCATCAATCATTGAAACCGGTTCGTACTCAAAGGAAGTCCGTCGAATTTCTCGTGCCGTGCGCCTTACATTTGCATTGAGACGTAAACTTACTGCACCGCTCCTCTCATCCTTTCTTGATTACGTTCTCGTGCCCGCTTCTGAACTTCACGCTAAGTTTTCCTCTTATCTTCCTAGTTTCAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTGCAACAGCTGCCATTCAAAACCCGGTGGCAAAACACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTAATTGACCAGAAAAGATATGATGCGGCCAAAGTTTGTTCCTCAGCTAGCATTGTTCGGCTGAAGAGCTTGAATAGAAGAACTGTCGATGTTATTGCATCTAGACTGTACTTTTATTACTCGTATAGCTATGAGCTTACAGGAGATCTCGCTGAAATTAGAGGCAACCTCCTTGCATTGCACCGGATTGCTACTCTGCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTACACTACAACCTATATGATCAGGCAGAGAAATTGAGGTCTAAGGCTCCACGTTTTGAGGCCCATTCAAATCAGCAGTTTTGTCGTTATCTCTTCTACCTTGGCAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCTCCTAGTGCAGCACGAGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTATTATTGGGAGAAGTGCCTGAAAGGAATGTCTTTATGCAGAGAGGAATGGAGAAAGCTTTGAGACCTTACTTTGAGCTTACTAATGCTGTTCGGATTGGTGACCTAGACTTGTTTAAGAATGTTGCAGAGAAGTTTGGTACAACTTTCAATAGAGATGGAACTCATAATTTGATTGTTCGGCTGCGCCATAATGTCATTAGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATATCGGTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCTAATCCTGTTGCTGATGCTGAGAGCATTGTAGCAAAGGCTATCCGCGATGGGGCTGTTGATGCTTCATTGGATCATGCTGATGGGTGGATGGTATCGAAGGAAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCATTTAATTCTCGGATTTCCTTTTGTCTTAACATGCACAACGAGGCTGTTCTAGCACTGCGTTTTCCACCAAACACACATAAGGAAAAGGAAAGTGCCGAGAAGAGGAGAGAAAGACACCAACAAGAGCAAGAATTGGCTAAGCATATCGAAGAGGAAGATGACGATGACTTCTGA 1473 0.4352 MSEDVEMKDQATPSHLVSSALPSTLQHLKEISSIIETGSYSKEVRRISRAVRLTFALRRKLTAPLLSSFLDYVLVPASELHAKFSSYLPSFKEGDREMEVDSATAAIQNPVAKHLLPELEIYCYLLVLLFLIDQKRYDAAKVCSSASIVRLKSLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPSAARGFRIQCNKWAVIVRLLLGEVPERNVFMQRGMEKALRPYFELTNAVRIGDLDLFKNVAEKFGTTFNRDGTHNLIVRLRHNVIRTGLRNISISYSRISVADVAKKLRLNSANPVADAESIVAKAIRDGAVDASLDHADGWMVSKETGDIYSTNEPQLAFNSRISFCLNMHNEAVLALRFPPNTHKEKESAEKRRERHQQEQELAKHIEEEDDDDF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00041 490 Gene3D - 234 420 - -
Phco2g00041 490 ProSiteProfiles PCI domain profile. 242 423 IPR000717 -
Phco2g00041 490 MobiDBLite consensus disorder prediction 456 480 - -
Phco2g00041 490 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 IPR000717 -
Phco2g00041 490 SMART PCI/PINT associated module 177 348 - -
Phco2g00041 490 MobiDBLite consensus disorder prediction 455 490 - -
Phco2g00041 490 FunFam 26S proteasome non-ATPase regulatory subunit 3 123 446 - -
Phco2g00041 490 Coils Coil 457 485 - -
Phco2g00041 490 SUPERFAMILY "Winged helix" DNA-binding domain 349 424 IPR036390 -
Phco2g00041 490 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 4 481 - -
Phco2g00041 490 Pfam Proteasome regulatory subunit C-terminal 423 489 IPR013586 GO:0000502|GO:0030234|GO:0042176
Phco2g00041 490 Pfam PCI domain 314 419 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00041 Phco-Chr2 506846 511393 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00041 2 506846 511393 Phco2g00041 2 506846 511393 ECH
Phco2g00041 2 506846 511393 Phco7g00254 7 1778333 1781097 PCT