Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00023 ATGGGCTTCTTGAAGGAACAAACCAATCAACAAACTGATCCAGCTGCACTTTTACGTGATGGAGAAGAGATACTTCTTCAGGGATTCAACTGGGAGTCTCACAAACACAACTGGTGGAATACCTTAGAAACCAAAGTTCCTGACATTGCTAAATCTGGATTTACATCGGTGTGGTTGCCACCACCAACTCACTCGTTTTCACCTGAAGGTTACACTCCGCAGAACCTTTACTCTCTTAACAGCAAATATGGTTCTGAGCGTCAGCTAAGAGCTTTGCTTCAGAAGATGAAGCAATATAAAGTCAGAGCAATGGCAGACATAGTCATCAATCATCGTACTGGGACCACTAAAGGACGTGGAGGGATATATAATCGTTTTGATGGAATTCCATTAGGGTGGGATGAACGTGCAGTGACATCATGTACTGGAGGACTGGGTAATCGAAGCACAGGAGCTGTTTTCGATGGATTTCCTAACATTGACCATAGTCAAGACTTTGTGAGAAAGGATATCATTGGCTGGCTCCGTTGGTTGCGCCATGATGTGGGCTTTCAAGATTTTCGGTTTGATTTTGCAAAGGGGTTTGCAGCAAAATATGTGAGAGAATATATTGAGGGAGCTAAGCCTTTGTTCTCTGTCGGGGAGTACTGGGATACTTGCAACTATAAAGGTTCTTCTTTGGACTATAATCAAGATGGTCATAGACAACGTATAGTGAATTGGATAGATGGCACTGGACAACTTTCAACTGCATTTGACTTTACAACAAAAGGGATTCTTCAGGAAGCTGTGAGAGGAGAGCTTTGGCGCCTGCGTGATGCTCAAGGAAAGCCCCCAGGTGTGGTCGGCTGGTGGCCATCAAGATCTGTCACATTTATTGATAATCATGACACAGGCTCAACCCAGGGTCATTGGCCATTCCCGAAAGACCATATTATGGAGGGGTATGCATATATACTGACTCATCCCGGAATACCAACAGTTTTCTATGATCACTTCTATGACTGGGGCAATTCAATTCGGGATCAGATTGTGAAATTGATTGATGTTCGCAAGCGTCATGGTATTCAAAGTAGATCAGGTGTGAGGATTGTGGAGGCCAGACATGATCTCTATTCTGCAATAATTGGAGAAAAAGTGTGCATGAAAATTGGAAATGGTTCATGGTGTCCCTCTGGGAGGGAATGGACATTGTCAACTTCAGGCCACAATTATGCAGTGTGGCATAAGTGA 1233 0.438 MGFLKEQTNQQTDPAALLRDGEEILLQGFNWESHKHNWWNTLETKVPDIAKSGFTSVWLPPPTHSFSPEGYTPQNLYSLNSKYGSERQLRALLQKMKQYKVRAMADIVINHRTGTTKGRGGIYNRFDGIPLGWDERAVTSCTGGLGNRSTGAVFDGFPNIDHSQDFVRKDIIGWLRWLRHDVGFQDFRFDFAKGFAAKYVREYIEGAKPLFSVGEYWDTCNYKGSSLDYNQDGHRQRIVNWIDGTGQLSTAFDFTTKGILQEAVRGELWRLRDAQGKPPGVVGWWPSRSVTFIDNHDTGSTQGHWPFPKDHIMEGYAYILTHPGIPTVFYDHFYDWGNSIRDQIVKLIDVRKRHGIQSRSGVRIVEARHDLYSAIIGEKVCMKIGNGSWCPSGREWTLSTSGHNYAVWHK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00023 410 CDD AmyAc_arch_bac_plant_AmyA 24 362 - -
Phco2g00023 410 PIRSF Alpha-amylase_plant 6 410 IPR013775 GO:0004556|GO:0005509|GO:0005975
Phco2g00023 410 Pfam Alpha-amylase C-terminal beta-sheet domain 353 409 IPR012850 GO:0004556|GO:0005509|GO:0005975
Phco2g00023 410 PRINTS Alpha-amylase signature 100 111 IPR006046 GO:0004556|GO:0005975|GO:0043169
Phco2g00023 410 PRINTS Alpha-amylase signature 184 195 IPR006046 GO:0004556|GO:0005975|GO:0043169
Phco2g00023 410 PRINTS Alpha-amylase signature 287 299 IPR006046 GO:0004556|GO:0005975|GO:0043169
Phco2g00023 410 SMART alpha-amyl_c2 352 410 IPR012850 GO:0004556|GO:0005509|GO:0005975
Phco2g00023 410 PANTHER ALPHA-AMYLASE 25 409 - -
Phco2g00023 410 SMART aamy 23 363 IPR006047 GO:0005975
Phco2g00023 410 Gene3D - 356 410 IPR013780 -
Phco2g00023 410 Gene3D Glycosidases 23 355 - -
Phco2g00023 410 Pfam Alpha amylase, catalytic domain 45 112 IPR006047 GO:0005975
Phco2g00023 410 SUPERFAMILY (Trans)glycosidases 30 341 IPR017853 -
Phco2g00023 410 SUPERFAMILY Glycosyl hydrolase domain 356 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00023 Phco-Chr2 421903 424679 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00023 2 421903 424679 Phco2g00023 2 421903 424679 ECH