Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00009 ATGGTCTCTGCAACAAACCCTAACCCTAAATCTAAAAATGTTTACCACATCGGAGGTCTGCAAGTAGAATTTCCTTACCAACCATATGGGTCTCAGTTTGCGTTTATGGGTAGAGTAATCTCTACCCTCAATCAAGCTCAGAGAGAAGGCCACTGTCACGCGTTGCTCGAGTCTCCAACCGGCACCGGCAAGTCCCTTTCGCTTCTCTGTTCATCTCTCGCTTGGCAGCACCACTATAAATCTAAACAAGACCACCTCAAGCCCGCCCCGGAGGCAACCACCGATCCTCTGGCTCATGGCGGTGGATTTGTTCTCGAGGATATTTCACCATCTTCTGAAAATCCGGACCGTACGCAAACTGAGGCCAACAACAAGAAGCAGAAGAAAAAGGAAGCACCGACTATTTATTATGCTTCGAGAACGCACTCACAGATTTCTCAAGTGATTCACGAATTGCGTAAAACTGCATACAGGGTACCAATGGCTGTGTTGGCGTCGCGGAAACATTACTGCACAAATAAAAATATAATTGGCAAAGAGAATATCAATGAAGAATGTAAACTATTATTGAAAGATCAGGCAACAGGGTGTCCAGAATTCAAAAATGCTCATAAAGTCAAAGGTCATCCATCCCTTCAGAAAGGAGGATGCAATGAAGTGCATGACATAGAAGATATTGTAAAAGTTGGACAATTGGTCAAAGGGTGCTCTTATTATGCTGCTCGTTCTATGTCAGATGATGCACAGTTGGTATTTTGTCCATATAACTACATCATTAATCCAGTCATCCGGGCAGCAATGGATGTGGATATCAAAGGAGCCATAGTGATTCTTGATGAAGCTCACAATATAGAGGACGTTGCTCGTGATGCAGGAAGTGTGGATATTGAAGAGGATGTTTTGGATAAACTACAAATGGAACTCCAGCAACTTTGCTCAATCAATGCTGCAATTTACCAACCGCTATATGAAATGACACAGGGCCTTACTAGTTGGATGGAACAGAAGAAACACAAGCTTGAAAAACGTGATTTTCACCACTATGTATCGTGTTGGACTGGTGATAATGCTTTAGGAGAGCTTGAAGAAGCAAATATTTCGAAGCAGTGTTTCCCTATCTTGCTAGAATGTGCTACCAAGGCAATCAAAGTTGCTACAGACTTGGAGGCAGATGAACCGCATATAAGTGGCACGGCAGTGATAACATTGGAAGGCTTATTCTCGTCTCTAACTTATTTCTTCTCAAGAAATGGATCTCACATGTTGGATTACCAGCTTGCTCTTCAGCGACGTGTTAGAAAAGATACTGGAAGAGCTACTGGAAACTGGACGTGCGCTTTTAGTTTATGGTGTTTGAATCCAGCAGTTGTGTTTAGAGATGTTGCTGATCTTTCTTTATCAATCATCTTGACTTCAGGAACACTGTCACCAATGGCATCCTTTACTTCTGAGCTTGGAGTTCATTTTGAAACTAGTCTAGAAGCTCCTCATGTAATTGATGTTGACTCACAGGTGTGGCCGGCTGTAATCTCCACTGGTCCTGGCAATTATCCTTTGAATGCAAGTTATAAAACTGCAGATGGATATGCATTCCAGGATGCAGTTGGAAAATCTTTAGAGGAAATCTTCAAGATTGTTCCAGGTGGATGCCTTGTGTTCTTTCCAAGTTATAAATTGATGGACAAATTACGCAACCGTTGGTCTGAAACAGGTCAATGGTCTAGACTAAATGCAGAAAAGCCTCTTTTTGTCGAACCAAGAGGAGGAAGCCAAGATGATTTTGAACTTGCATTAAAGGGGTATTATGATTCAATTCATCATGAAAAAAGACCTGCGCGGGGAAGGAAAAGAAGGATTAAGACAATAGATCTAAATCATGTTCACGCAGTTAATTCCCTACAGAATTCTAGGAAAGGAGGAGCAGCTTTACTTGGTGTTTGCCGAGGAAAGGTTTCTGAAGGAATTGATTTCTCCGATGATAATGCTAGAGTAGTTATCATTGTTGGTATTCCATTTCCAAATATAAATGATATTCAAGTTGCACTGAAGAAGAAATATAATGACACCTACAAATCAGTCAAAAATCTATTGAGTGGAAATGAATGGTACTGCCACCAAGCATTCCGAGCTTTAAATCAAGCATCAGGGCGCTGTATACGTCATAAATTTGATTATGGAGCAATTATCCTATTGGATGAACGTTTTCAAGAAGAAAGAAACAGGGCATTCATTTCAAAGTGGCTAAGAAGACCGTTGAAAGTATATGACAGCTTTGATTTGTCATTGGAGGGATTAAAATCTTTCTTTGAGAATGTGAAGGAACATTATGGCATAAATACAGTGCATGCCACACAGAGTTTGGATATAAATGGGGATGTCCATAAGAAGGATCAGAATGCAGGTTCTACAAGAAAAAAAAATCAGAAGCTGAATAGGTCTGATAATGGAGACGGGAAAGAAACAATGATCAAGAATAGCATTTCTTCTACAACCCTAACCTCTCAAGATCTTGTCAAGTGTCAGCCATCTGCTCAAAAGAATAGTAACACTTACAGTTGTAAATATCTCCCACAGTACTTTACTAAGACAGACCCAAGGTTCACTATCGAATCATCTGCTGCAATCATGCACGAGGAAACTTCCATTGTCAAGGAAACCCCTTGTATAGATGTTGACTATGATCCCTGTAGCCCTCATTACTCCAAGGATGACAACTCTGGTTCCTTCATAATTGAGGCCCCAGCTCAAATTCCAGATCACTTGTCCAGTCTTTCAATGTCTTTAACTAATGGAAGCAACAATTCTTCAAGGGCCCAGTCTTCAATTACAATTACTCCTAAAAAGAATGTAATTACAAATGATATTCCAGAAATGGAAAGTGTTAATTCTTACCATCATAAAAGGATGAGGGCCACACCGTATATAAACCTTGTTGAAGAAGAAAACTTCATTGCACCTTGTGCCAGTCCTCTTACGCGGTACAGAAAGAGCGCTGTAGTTGTTAGAGAGATAACTCATGGAAGTGAATATGATTTGGAGAGGAATTTGAAGTCAAATTCTCCACAATTACTGATAAACAATATACCCGGTTCATGTTCACCAACTGCCCCTCCACTAGACCAAAGATTATTGATACTTTGTTCACTATGCAAAAGTCCATTGGGCCGACCTGAGAACCGCCTATATCTTACTTGCTCGTTGATTTCATCATCAAAAGTTCATTTAAGATCCCTTTTGAAACAGCGGCTGAAAACTTGCACTACTGATACTTCAAAGAGTATCCCAGTTATCATTACTGATTCTTTATTTGTTGATCAACGAATTTGCAATAGAATACCCAAAAGCGCACCGGAACACAGTATTTGGTGTCCAGAAGATGGGTGTGTTTTCAGCACTATTTTCTGTCCCTTTTGCAGTAATGTCAGCAATTTGCTAGGAGTTCAAATCATGGCTACCGACTCATCAAATGTTCAGTTACTTGACAAGATATTGTTTTACTTTGATTCATTGGAAGTGAAGAGCAGTGAGGAATCAGGGAACATTGCTTCAGGAAAAGGGGATCTGTCGCCAGTTAATGACTCTGATGAGGATAAAATTACGGTGTTAAATTCGATTGAAAAATATTCTTATCTTCACCGGCCAGGGAATGCAGAAGTCTGGAAGACTAGAAAATCGAAGCAAAGACTAAGAGGCTTGTGCTGTGCAGCAAACCAAAGCTGA 3720 0.4046 MVSATNPNPKSKNVYHIGGLQVEFPYQPYGSQFAFMGRVISTLNQAQREGHCHALLESPTGTGKSLSLLCSSLAWQHHYKSKQDHLKPAPEATTDPLAHGGGFVLEDISPSSENPDRTQTEANNKKQKKKEAPTIYYASRTHSQISQVIHELRKTAYRVPMAVLASRKHYCTNKNIIGKENINEECKLLLKDQATGCPEFKNAHKVKGHPSLQKGGCNEVHDIEDIVKVGQLVKGCSYYAARSMSDDAQLVFCPYNYIINPVIRAAMDVDIKGAIVILDEAHNIEDVARDAGSVDIEEDVLDKLQMELQQLCSINAAIYQPLYEMTQGLTSWMEQKKHKLEKRDFHHYVSCWTGDNALGELEEANISKQCFPILLECATKAIKVATDLEADEPHISGTAVITLEGLFSSLTYFFSRNGSHMLDYQLALQRRVRKDTGRATGNWTCAFSLWCLNPAVVFRDVADLSLSIILTSGTLSPMASFTSELGVHFETSLEAPHVIDVDSQVWPAVISTGPGNYPLNASYKTADGYAFQDAVGKSLEEIFKIVPGGCLVFFPSYKLMDKLRNRWSETGQWSRLNAEKPLFVEPRGGSQDDFELALKGYYDSIHHEKRPARGRKRRIKTIDLNHVHAVNSLQNSRKGGAALLGVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKYNDTYKSVKNLLSGNEWYCHQAFRALNQASGRCIRHKFDYGAIILLDERFQEERNRAFISKWLRRPLKVYDSFDLSLEGLKSFFENVKEHYGINTVHATQSLDINGDVHKKDQNAGSTRKKNQKLNRSDNGDGKETMIKNSISSTTLTSQDLVKCQPSAQKNSNTYSCKYLPQYFTKTDPRFTIESSAAIMHEETSIVKETPCIDVDYDPCSPHYSKDDNSGSFIIEAPAQIPDHLSSLSMSLTNGSNNSSRAQSSITITPKKNVITNDIPEMESVNSYHHKRMRATPYINLVEEENFIAPCASPLTRYRKSAVVVREITHGSEYDLERNLKSNSPQLLINNIPGSCSPTAPPLDQRLLILCSLCKSPLGRPENRLYLTCSLISSSKVHLRSLLKQRLKTCTTDTSKSIPVIITDSLFVDQRICNRIPKSAPEHSIWCPEDGCVFSTIFCPFCSNVSNLLGVQIMATDSSNVQLLDKILFYFDSLEVKSSEESGNIASGKGDLSPVNDSDEDKITVLNSIEKYSYLHRPGNAEVWKTRKSKQRLRGLCCAANQS 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00009 1239 FunFam Fanconi anemia group J protein homolog 516 763 - -
Phco2g00009 1239 Pfam DEAD_2 137 300 IPR010614 GO:0003677|GO:0003678|GO:0005524
Phco2g00009 1239 SMART Cxpdneu3 557 737 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Phco2g00009 1239 SMART deadxpd 20 339 IPR006554 GO:0003678|GO:0016818
Phco2g00009 1239 FunFam Fanconi anemia group J protein-like isoform E 113 333 - -
Phco2g00009 1239 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 17 771 IPR045028 -
Phco2g00009 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 731 IPR027417 -
Phco2g00009 1239 Gene3D - 516 760 IPR027417 -
Phco2g00009 1239 MobiDBLite consensus disorder prediction 789 821 - -
Phco2g00009 1239 MobiDBLite consensus disorder prediction 789 819 - -
Phco2g00009 1239 CDD SF2_C_XPD 503 735 - -
Phco2g00009 1239 MobiDBLite consensus disorder prediction 84 132 - -
Phco2g00009 1239 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 18 340 IPR014013 GO:0005524
Phco2g00009 1239 Gene3D - 28 341 IPR027417 -
Phco2g00009 1239 Pfam Helicase C-terminal domain 539 749 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00009 Phco-Chr2 126251 139671 Dispersed