Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00816 ATGGTTGGATTCCAGAGTGAGCATAAGGCCGGAAACAAGTACAATGGTAATTCTAATATTATTCCGGATCGTGTTGAACGTCTTATGAGACGAAGAGAGCTTTTGAAAAGCGGCAAGGCATCTCTTTTGAATGAGGCTCCTGATAGTAATAATAATAATAATAATAATGTGATTACTGAATATTTTGAGCATGACCCGCGCTTAAGGGAAGATAATAACTCTGCTGCTTCCTATGAACGATTACTGGAAGGAGCGGCGGCGGCACTACGGGGCGAGATAGGAGATGGGAGACCTTTCAAACAACGGCTTTTGGTGGTGGCCAATAGGCTCCCAGTCTCGGCAATTAGGAAAGGCGAGGATTCGTGGTCTTTGGAGATAAGTGCTGGTGGCCTTGTGAGCGCTCTTTTAGGTGTGAAGGCTTTGGAGGCAAGGTGGATAGGTTGGGCTGGAGTCAATGTGCCAGATGAGATTGGACAAAAGGCACTTACGAAAGCTTTGGCTGAAAAGAGGTGCATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATACTATAATGGCTATTGCAACAACATTCTGTGGCCTCTTTTTCATTACCTTGGACTTCCCCAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAATCTCAATTTGAAGCATACCAGAAGGCAAATCAAATGTTTGCCGATGTTGTAAACAAGCACTACGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTACAACCCCAAAATGAAAGTTGGCTGGTTTCTTCATACCCCATTTCCATCTTCTGAGATTCACAGGACATTGCCTTCTCGCTCAGAGCTTCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGACTATGCACGACATTTTGTTAGTGCATGTACTCGCATTCTTGGACTTGAGGGAACGCCTGAAGGGGTTGAGAATCAAGGGAAGCTGACTCGAGTTGCAGCATTTCCAATAGGTATAGACTCTGAACGATTCATACGTGCACTTGACCATACTCAAGTGAAGGCTCACATAAAAGATTTACAAGAGAGATTTAAAGGGAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAAAAAATTCTAGCATTTGAAAAATTTTTGGAAGAGAATCCTGATTGGTGTGATAAGGTTGTTCTGCTTCAAATTGCCGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTTGCTACCGTTCCTATACATCACCTGGATTGCTCTCTTGATTTTCATAAACTATGTGCTTTGTACGCTGTCACGGATGTAGCACTTGTCACCTCTCTAAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGCGAATTTGCCGGTGCTGCACAGTCACTTGGTGCTGGGGCAATTCTCGTCAACCCTTGGAACATCACAGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAATATGAAATCGGAAGAACGAGAGAAGAGACATAAGCATAACTTTAAACATGTAACAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTGAGTGAACTAAATGATACTATTGATGAGGCACAACTAAGGACAAAACAAGCTCCACCACGGCTCCCAACAGAGACTGCAGTTGAACGTTATTTGCAGTCAAATAATCGATTGCTTATTTTGGGTTTCAATGGAACTCTAACCGTACCAGTTGAGAGAAAAGGTGATCAGTATCAAGAAACTGAACTCACAGTGCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGGTAGACCAGTTCTAGATCAAAACTTCAAAGAGTATGACATCTGGCTAGCAGCAGAGAATGGAATGTTCTTAAATCCTTCTAAGGGAGAATGGATGACAACAATGCCAGAGCAACTAAATATGGAATGGGTTGACAGCGTGAAGCATGTTTTTGACTACTTCACAGATAGAACACCTCGATCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAGTTACAGACATTCAGATGTTGAGTTTGGAAAACTGCAAGCTAGGGACATGCTGCAGCATCTCTGGACAGGACCAATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGGAGCCGGTCTGTTGAGGTGCGAGCTGCTAATGTTACAAAGGGAGCAGCCATTGACCGTATTCTAGGGGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTACGTTTTGTGTATAGGACATTTTCTAACAAAGCAGGATGAGGATATATATGCGTTTTTTGAGCCAGAGCTACCTTCTATTGGTGTGGGTCTTCCACGAAGTAAGGTAACAGAAGGAGTTAAGTTTCCTGCGGAGAGGATATCATCATTGAAGATTCCAGCAAGTAAAAATGGAGCAGCAAAATCATCCCAAAATAAGGGACAACGTGTTGTGCCAAGTTCTGAGAGGAAAACAAATAATCATGTGTGCCGTGCGCCACGTCGTCCAGCTCCTGAAAAGATCTCCTGGAATGTCCTTGACCTGAAGAAGGAGAATTACTTTTCTTGTGCTGTTGGACGAACACAAACCAATGCTCGGTATACGCTTGGATCACCAGATGAAGTTGTTGCATTTCTGAAGGAACTTGTCAATTCATCTCCATACTCTTATGTCTGA 2820 0.4305 MVGFQSEHKAGNKYNGNSNIIPDRVERLMRRRELLKSGKASLLNEAPDSNNNNNNNVITEYFEHDPRLREDNNSAASYERLLEGAAAALRGEIGDGRPFKQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKALEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNPKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDHTQVKAHIKDLQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPDWCDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLATVPIHHLDCSLDFHKLCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMKSEEREKRHKHNFKHVTTHTAQEWAETFVSELNDTIDEAQLRTKQAPPRLPTETAVERYLQSNNRLLILGFNGTLTVPVERKGDQYQETELTVHPELKQPLAELCSDPKTTVVVLSGSGRPVLDQNFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSHFEEREASLVWSYRHSDVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKQDEDIYAFFEPELPSIGVGLPRSKVTEGVKFPAERISSLKIPASKNGAAKSSQNKGQRVVPSSERKTNNHVCRAPRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSPDEVVAFLKELVNSSPYSYV 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00816 939 Gene3D Glycogen Phosphorylase B; 97 342 - -
Phco10g00816 939 Gene3D - 689 769 - -
Phco10g00816 939 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 570 - -
Phco10g00816 939 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 689 769 - -
Phco10g00816 939 NCBIfam trehalose-phosphatase 598 814 IPR003337 GO:0003824|GO:0005992
Phco10g00816 939 CDD HAD_TPP 600 832 - -
Phco10g00816 939 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 96 930 IPR001830 GO:0003824|GO:0005992
Phco10g00816 939 MobiDBLite consensus disorder prediction 848 881 - -
Phco10g00816 939 Pfam Glycosyltransferase family 20 102 567 IPR001830 GO:0003824|GO:0005992
Phco10g00816 939 MobiDBLite consensus disorder prediction 850 874 - -
Phco10g00816 939 SUPERFAMILY HAD-like 599 931 IPR036412 -
Phco10g00816 939 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 102 567 IPR012766 GO:0003825|GO:0005992
Phco10g00816 939 Pfam Trehalose-phosphatase 622 826 IPR003337 GO:0003824|GO:0005992
Phco10g00816 939 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 349 551 - -
Phco10g00816 939 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 94 348 - -
Phco10g00816 939 CDD GT20_TPS 102 567 IPR001830 GO:0003824|GO:0005992
Phco10g00816 939 Gene3D Glycogen Phosphorylase B; 344 551 - -
Phco10g00816 939 Gene3D - 603 827 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00816 Phco-Chr10 10876543 10886805 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00816 10 10876543 10886805 Phco9g01885 9 43470894 43477080 ECH
Phco10g00816 10 10876543 10886805 Phco10g00816 10 10876543 10886805 ECH