Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00604 ATGGCCGCTTCATCTTTCCTCAGATCCGCGTTTCTCACACCTTCCTCCTGCGATCGTTTAAAGGTATTTAGCAACGCCTCGAGTTGCAATGTAAAATCTATAGGATTAGAGAGCAGCATATTTGGTAATTCAATTCAATGTGACTCATTAGTCTTACAAAACTACACTACTCGGGGGATCCAGCCTATTAAATCCACAGCGACAGAAATCCCTCTCCCCGCCCAGCAATCAAGGAGCACTGGGAAGACTAGAGTTGGAATAAATGGTTTTGGTAGAATTGGAAGGTTGGTGCTACGTGTAGCTACTTCACGAGATGATATTGATGTTGTTGCAATTAATGATCCTTTTGTTGATGCAAAATATATGGCTTACATGTTTAAATATGATTCTACTCATGGTCCATTCAAGGGGACCATTAAAATTTTGGATGACTCTACTTTGGAAATTAATGGAAAGCAGGTTAAAGTTGTGAGCAAAAGAGATCCTGCAGAGATCCAATGGAGTGATTTTGGGGCTGATTATGTCATCGAGTCATCGGGAGTTTTCACAACTGTGGAAAAAGCTTCATCACATTTGAAGGCTGGTGCCAAGAAAGTAATAATATCAGCTCCATCTGCTGATGCTCCAATGTTTGTGGTAGGAGTGAATGAGAAGACATACCACCCAGAAATGGACATTGTTTCTAATGCAAGCTGTACAACAAATTGCCTTGCTCCTCTTGCCAAGGTGGTTCATGAAGAGTTTGGAATAGTTGAAGGTTTAATGACAACTGTACATGCGACAACAGCAACACAGAAGACTGTAGATGGCCCTTCTATGAAGGATTGGCGAGGGGGAAGAGGGGCAAGCCAAAATATAATTCCAAGTTCAACTGGTGCTGCAAAGGCTGTTGGGAAAGTTCTTCCTGAGTTAAATGGAAAACTCACTGGGATGGCATTCCGTGTACCGACTCCCAATGTTTCTGTGGTGGACTTGACTTGCCGGCTTAGGAAGAATGCTTCTTATGAAGATGTTAAATCAGCAATAAAGTATGCCTCCGAGGGCCCACTGAAAGGAATCCTTGGGTACACAGAAGAGGATGTTGTTTCTAATGACTTCGTTGGTGATTCAAGGTCAAGTATCTTTGATGCCAAGGCTGGCATTGCACTTAGTTCTTCCTTTGTTAAGCTGGTTTCATGGTATGATAACGAATGGGGTTACAGCAACCGCGTGTTGGACCTTATAGAGCACATGGCGTTGGTCGGAGCTCAAAATTGA 1257 0.4288 MAASSFLRSAFLTPSSCDRLKVFSNASSCNVKSIGLESSIFGNSIQCDSLVLQNYTTRGIQPIKSTATEIPLPAQQSRSTGKTRVGINGFGRIGRLVLRVATSRDDIDVVAINDPFVDAKYMAYMFKYDSTHGPFKGTIKILDDSTLEINGKQVKVVSKRDPAEIQWSDFGADYVIESSGVFTTVEKASSHLKAGAKKVIISAPSADAPMFVVGVNEKTYHPEMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLRKNASYEDVKSAIKYASEGPLKGILGYTEEDVVSNDFVGDSRSSIFDAKAGIALSSSFVKLVSWYDNEWGYSNRVLDLIEHMALVGAQN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00604 418 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 84 184 IPR020828 GO:0051287
Phco10g00604 418 Gene3D - 84 411 - -
Phco10g00604 418 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 230 237 IPR020830 GO:0016620
Phco10g00604 418 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 84 406 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Phco10g00604 418 SMART gp_dh_n_7 83 232 IPR020828 GO:0051287
Phco10g00604 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 310 327 IPR020831 GO:0016620
Phco10g00604 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 350 365 IPR020831 GO:0016620
Phco10g00604 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 191 204 IPR020831 GO:0016620
Phco10g00604 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 253 269 IPR020831 GO:0016620
Phco10g00604 418 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 226 244 IPR020831 GO:0016620
Phco10g00604 418 FunFam Glyceraldehyde-3-phosphate dehydrogenase 231 396 - -
Phco10g00604 418 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 231 394 - -
Phco10g00604 418 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 237 394 IPR020829 GO:0016620
Phco10g00604 418 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 82 412 IPR020831 GO:0016620
Phco10g00604 418 Gene3D Dihydrodipicolinate Reductase; domain 2 232 398 - -
Phco10g00604 418 FunFam Glyceraldehyde-3-phosphate dehydrogenase 83 242 - -
Phco10g00604 418 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 82 248 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00604 Phco-Chr10 6711631 6717700 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00604 10 6711631 6717700 Phco10g00604 10 6711631 6717700 ECH