Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00587 ATGGCCGTTGAGGCGCGCCATCTCAATCTCTTCCCCTCTCAACTCCTAACCAACCGCAGCCAAGTCATGAATTCTGTGGATGCGAATATCAACACGTATAACGCGCAACAGATTGGTTATTCTTCGTTTTTGCCGTCATCCGGTGCCCTCACGGAAGCGGTGCTTCCTTCGTCGGTGTACAATTCGCTTGGAAACGCCGTCAAATCTGAAAGCGGTTTGACCTACAACAACAGCGCTGCTGTTCCTCCCATGTCCAGAAAGCGTTCCAGAGAGAATTACAGCTACAACGACTCCTTCTCGTTTCTCGGCCAAGACGTTTCTCTTCAGATCCAACAGCAGCAACTTGACATCGAGCATTTAATCATGCAACGCATGGAGAAGGTGAGAATAGAGATTGATCAGAAGCGGAAGAGGCAGGCCAGGAGGGTAATCCAGGCGATTGAGGTAGGCGTGATGAAGAAGCTGAAGGCGAAGGAGGAGGAGATAGAGAAAATCGGGAAACTTAATTGGGCGTTGGAAGAGAGAGTGAAGTCTCTGTGCATGGAGAATCAGATTTGGCGTGACCTGGCTCAAACGAACGAAGCCACGGCGAATGCTCTGCGGTGTAATCTGGAACAGGTGTTGGCACAGCGTGGAATGGTGGACGACGACGGCACCGCCACCTTGATGGACGACGCTCAGTCTTGCTGCGGGAGCACCGACGAGGACGGTGAAGGGGAGAAAGAGGTTGAGTGGCGGACGATAGCAGCGGGGTGCGCAGGGGTGAAGAATAAGGAGGACGGTGGTTGTGAAAAAATGATGATTGGTGAGAGTAATGGGAGGTTGTGCAGGAACTGTGGGAAAGAAGAGTCGTGCGTGCTGATTTTGCCGTGCCGGCACCTGTGTTTGTGTACTGTGTGTGGGTCTACACTCCACATTTGTCCTATATGTAAATCCTTCAAGACTGCTAGTGTCCATGTTAACATGTCCTAA 972 0.5144 MAVEARHLNLFPSQLLTNRSQVMNSVDANINTYNAQQIGYSSFLPSSGALTEAVLPSSVYNSLGNAVKSESGLTYNNSAAVPPMSRKRSRENYSYNDSFSFLGQDVSLQIQQQQLDIEHLIMQRMEKVRIEIDQKRKRQARRVIQAIEVGVMKKLKAKEEEIEKIGKLNWALEERVKSLCMENQIWRDLAQTNEATANALRCNLEQVLAQRGMVDDDGTATLMDDAQSCCGSTDEDGEGEKEVEWRTIAAGCAGVKNKEDGGCEKMMIGESNGRLCRNCGKEESCVLILPCRHLCLCTVCGSTLHICPICKSFKTASVHVNMS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00587 323 CDD mRING-HC-C3HC5_CGRF1-like 274 311 - -
Phco10g00587 323 PIRSF SBP1_RNase_bind 1 78 IPR017066 -
Phco10g00587 323 PIRSF SBP1_RNase_bind 17 323 IPR017066 -
Phco10g00587 323 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 69 320 IPR017066 -
Phco10g00587 323 Coils Coil 155 175 - -
Phco10g00587 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 322 IPR013083 -
Phco10g00587 323 ProSiteProfiles Zinc finger RING-type profile. 276 311 IPR001841 -
Phco10g00587 323 FunFam BOI-related E3 ubiquitin-protein ligase 1 253 323 - -
Phco10g00587 323 Pfam Zinc finger, C3HC4 type (RING finger) 274 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00587 Phco-Chr10 6470850 6472019 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00587 10 6470850 6472019 Phco10g00587 10 6470850 6472019 ECH
Phco10g00587 10 6470850 6472019 Phco9g01913 9 43946066 43947575 PCT