Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00576 ATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCAGTCTCCGCCTCTTCCTCTCGCTCCTCATCCCCCTCCTCCTCTCGCTCATCTCGTTCTCGCTCCCGTTCTCCTTCGCGCTCCAGATCCTTCTCATCCTCCTCCTCCTCTCCCTCCCGCAGCTCCCGTAGCCGCAGCCCTCCGCCGCAGAGGCGCAAAAGTCCAGCTGAAGCCGCAGCAGCAGCAGTTAGGCGTGGTCGATCACCTCCACCTCAATCAAAGAGAGCTTCACCTCCCCCAAGGAAACCTTCTCCTGTACGCGAATCACTTGTTCTTCATGTGGAAAAGCTCAGCAGAAATGTCAATGAGGGTCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAGGGATATGGATATGTGCAGTTCAAGACAAGAGAGGATGCTGAAAAAGCATTATTGTTCATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTTTACCTCCTAGGCAGAAAGTTTCACCACCCCCAAAGGCTTCTGTCGCTGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCTAGTGCAGATGTTGACAAGGATGGGCCAAAGCGTCAGAGAGAATCTCCTCGAAGAAAGCCTCCGTCACCACGGAGGAGATCTCCTGTACCTCGAAGAGCTGGTTCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGACACCCCTCCTAGGAGGCGGCCTGTGTCACCTGGAAGAGGTCGTTCTCCATCTCCACCAAGACGCCTTAGATCCCCTGCAAGGATCTCACCTAGAAGGATGCGTGGAAGCCCAGGGAGGCGACGTTCACCTCCTCCTCCTCCTCGGCGCCGATCACCACCACCTAGACGAGCTCGCAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGACGCACTCGCTCTCCAATACGTAGGTCGGCACGTTCACGGTCAAGGTCATTCTCACCTCGCAGAGGTAGGCCACCTGTTAGGCGTGGGAGGTCATCATCATACTCAGATTCACCAAGTCCACGCAAGGTTTCCCGGAGATCAAAGAGTCGTAGCCCAAGAAGGCCTTTGAGAGGAAGAGGAAGTAGCAATAGTAGCAGCAGCAGTTCACCACCACCACCACCAGCTCGCAAACCATAG 1254 0.5439 MAKPGRGRRSPSGSVSASSSRSSSPSSSRSSRSRSRSPSRSRSFSSSSSSPSRSSRSRSPPPQRRKSPAEAAAAAVRRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTREDAEKALLFMDGAQIDGNVIKARFTLPPRQKVSPPPKASVAAPKRDTPRTDNASADVDKDGPKRQRESPRRKPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARISPRRMRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPPPARKP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00576 417 MobiDBLite consensus disorder prediction 224 239 - -
Phco10g00576 417 MobiDBLite consensus disorder prediction 1 101 - -
Phco10g00576 417 Gene3D - 12 187 IPR012677 -
Phco10g00576 417 MobiDBLite consensus disorder prediction 295 366 - -
Phco10g00576 417 MobiDBLite consensus disorder prediction 203 223 - -
Phco10g00576 417 MobiDBLite consensus disorder prediction 243 273 - -
Phco10g00576 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Phco10g00576 417 CDD RRM_RNPS1 105 177 IPR034201 -
Phco10g00576 417 MobiDBLite consensus disorder prediction 180 417 - -
Phco10g00576 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Phco10g00576 417 FunFam Serine/arginine-rich splicing factor SR45 3 188 - -
Phco10g00576 417 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 261 385 - -
Phco10g00576 417 MobiDBLite consensus disorder prediction 11 62 - -
Phco10g00576 417 SMART rrm1_1 104 177 IPR000504 GO:0003723
Phco10g00576 417 SUPERFAMILY RNA-binding domain, RBD 90 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00576 Phco-Chr10 6348774 6353276 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00576 10 6348774 6353276 Phco10g00576 10 6348774 6353276 ECH