Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00569 ATGGCTTCACTGCTGAATACAGTGTCACCAGCTGCAAATTTATCCCCCAAAACAAAACGACCCACTTGTGGCGGTTTCTGGCACTCCCAGGTTCCGAATCTCCACATGTTTTCCCTCAACAAGGGTTTTTCTAGGGTTTCGGCTTCGACCCAGATTGCCATTGCCCCAAAAGATACGGTTTTTAATCTCCCCAAATGGAGAGGTGGGAGGAATGACCCTAGGGGTAAAGAGCTGAGGGTCTATGATGCATTTCTCCATTTAGAGTATTTGGTGGGTAAGGGCCAAAAGCCAGAAGTGACTCAAGCAACTCAGCTTTTGTATGATCTTTGCAAGTTTAACAAAGCTAGAAAGGCTGTGAAGGTAATGGATATGATGGTTGATTCAGGTATTATGCCTGATGCAGCCTCTTATACATACTTGCTCAATTTTCTGTGCAAGAGAGGCAATGTTGGGTATGCACTTCAGTTGGTTGAGAAGATGGAGGGGCATGGTTTTCCAACTACTACTGTTACCTATAACACTCTTGTTAAAGGCCTTTGCATGCACGGCAACTTGAACCAGAGCTTGCAGCTCTTGGATAAGTTGACAAAGAAGGGCTTGGTCCCGAATGCATTCACATTTTCTTTCCTTCTGGAAGCGGCGTATAAGGAAAGGGGAGTGGATGAGGCCAGGAAGCTTCTTGATGAGATAATTGCCAAGGGTGGAAAGCCTAATTTGGTTAGTTACAATGTGCTGTTAACTGGATTGTGCAAGGAAGAGAGAACTGAAGATGCTATCAGGCTTTTCAGGGAATTGCCTGCAAAAGGGTTCACTCCTAGTGTTGTGAGTTACAACATTTTGCTGAGGAGTTTGTGCTATGAAGAGCGGTGGGAGGAAGCGAACGAACTTCTTGCAGAGATGGATAAAGAGGACCAGTCTCCCTCGGTGGTTACTTACAACATATTGATTACTTCACTTTCATTTCATGGAAGAACAGAACAAGCTTTCCAGGTTTTGGATGAAATGACAAGGAGTGGGTTCAAGGTGAGTGCTACTAGCTATAATCCGATTGTTGCCCGCCTCTGCAAGGAAGGGAAAGTGGATCTTGTTGTTCAATGTATAGACCAAATGATTCAACGACGTTGTAATCCTAATGATGGAACGTACTGTGCTGTTGCAATGCTGTGTGAGCAAGCTAAGGTGCAGGAGGCTTTCTTTATAATCCAAAGCTTGGGTAATAAACAAAGCAACCCTATGCATGATTTTTACAAAAACGTGATCGCAAGCCTGTGTAGGAAAGGGAACACATATGCAGCCTTTCAGATGTTATACGAAATGACAAAGTATGGATTTACTCCAGATTCCTTTACCTATTCATCTATGATCAGAGGAATGTGTAGGGAAGGAATGCTAGATGAGGCCCTTAAGATATTCAGGATTTTGGAAGAAAATGACCACATTCCTAATATTGATAACTACAACGCACTTATACTTGGATTTTGCAAAGCTCGGAGAACAGACATGTCAATAGAGATATTTCTGATGATGGTTAACAAAGGATGTGTGCCTAATGAGAATACCTATACCATTCTTGTGGAAGGGCTTGCTTTTGAAGAGGAGACAGATATAGCTGCAGACCTGTTGAAAGAGTTGTGTGGGAGAGAGGTTCTGAGCCAAAGTACTGTTGAAAGGCTTTGTATGCAATTCGACTTCAAGGAATTAATAGCAGCAGAGTAG 1716 0.4307 MASLLNTVSPAANLSPKTKRPTCGGFWHSQVPNLHMFSLNKGFSRVSASTQIAIAPKDTVFNLPKWRGGRNDPRGKELRVYDAFLHLEYLVGKGQKPEVTQATQLLYDLCKFNKARKAVKVMDMMVDSGIMPDAASYTYLLNFLCKRGNVGYALQLVEKMEGHGFPTTTVTYNTLVKGLCMHGNLNQSLQLLDKLTKKGLVPNAFTFSFLLEAAYKERGVDEARKLLDEIIAKGGKPNLVSYNVLLTGLCKEERTEDAIRLFRELPAKGFTPSVVSYNILLRSLCYEERWEEANELLAEMDKEDQSPSVVTYNILITSLSFHGRTEQAFQVLDEMTRSGFKVSATSYNPIVARLCKEGKVDLVVQCIDQMIQRRCNPNDGTYCAVAMLCEQAKVQEAFFIIQSLGNKQSNPMHDFYKNVIASLCRKGNTYAAFQMLYEMTKYGFTPDSFTYSSMIRGMCREGMLDEALKIFRILEENDHIPNIDNYNALILGFCKARRTDMSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAADLLKELCGREVLSQSTVERLCMQFDFKELIAAE 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Phco10g00569 571 MobiDBLite consensus disorder prediction 1 20 - -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 449 482 IPR002885 -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 170 204 IPR002885 -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 486 518 IPR002885 -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 346 378 IPR002885 -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 310 343 IPR002885 -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 240 273 IPR002885 -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 416 448 IPR002885 -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 275 308 IPR002885 -
Phco10g00569 571 NCBIfam pentatricopeptide repeat 136 166 IPR002885 -
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Phco10g00569 571 SUPERFAMILY HCP-like 83 276 - -
Phco10g00569 571 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 94 318 - -
Phco10g00569 571 Pfam PPR repeat family 481 529 IPR002885 -
Phco10g00569 571 Pfam PPR repeat family 237 285 IPR002885 -
Phco10g00569 571 Pfam PPR repeat family 307 348 IPR002885 -
Phco10g00569 571 Pfam PPR repeat family 168 213 IPR002885 -
Phco10g00569 571 Pfam PPR repeat family 416 460 IPR002885 -
Phco10g00569 571 Pfam PPR repeat family 109 146 IPR002885 -
Phco10g00569 571 Gene3D Tetratricopeptide repeat domain 383 567 IPR011990 GO:0005515
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Phco10g00569 571 MobiDBLite consensus disorder prediction 1 16 - -
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Phco10g00569 571 Gene3D Tetratricopeptide repeat domain 232 301 IPR011990 GO:0005515
Phco10g00569 571 Gene3D Tetratricopeptide repeat domain 161 231 IPR011990 GO:0005515
Phco10g00569 571 Gene3D Tetratricopeptide repeat domain 302 372 IPR011990 GO:0005515
Phco10g00569 571 Gene3D Tetratricopeptide repeat domain 73 160 IPR011990 GO:0005515
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Phco10g00569 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00569 Phco-Chr10 6237058 6238773 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00569 10 6237058 6238773 Phco10g00569 10 6237058 6238773 ECH