Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00547 ATGTTAATTTTAGTGGGGAGCAAGCAGGGAACAATGAGTTCTCTTGCTTCTCCAGTGAGTTTGGGGAGCCTTATGGGTGTGAGTTCCTCTGGAAGGTCTCATTCTGGGGTCAGGAGGGTCTCTTTTTCCAGAGGGAATTGTAAGGGGAGAAAGAGATGGCATTGTTTATCATTGTCTGTGTGCAGATATTCAGTGACCACAACTGATTTTATTGCTGACCAAGGAAATTCAGTGTCCCTTGATTCTAACAGTAATAGTAGTAGTAGTAGTAAGGGTGCTGGAGATGATGGTACTGGTTTTGTGCTTAAGCCTCCTCCAAAGCCTGTGTTGAAGGCACCAGAGAATAGGGATGGACCCATCTTGGGGCCCTCAAGGACTACTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCACTTGGGGAGGTGTTGGAGAAGGCGGAAAAGCTGGGGAGTTCTAAGGTGAATGGTGATAAGAATAATGGTTCAGCGAATAAACCAATTAGGAATAATGCTGGTGCTAGTCCTAGGACTGAGAAACCGGTGAATTCAGCAGCATCTCTGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGACTCTGTTGCATCAGTGCAGAAGGTTGTGAAGGAAGTACCAAAGCCTAGTTATAACAAGAATGAAGAGGAGAAGTCTCAAACTGGAGGAGGGGAGAAGTTGGTTTCTCAAACTCGTGCTCCCCAACCACCTTCCAAACCTCAGCCTTTGAAACCTCAACAACCTTCAAAACCTCAACCTGCGTTACTATCGAAACCTTCTATAGCTCCTCCACCTGTCAAAAAACCTGTTGTCTTGAGGGACAAAGGAGCAGCTGAAACATCAGTTAAATCTAAAGAAAAGAAGTCACCCATCTTGATTGACAAGTTTGCTTCCAAGAAACCAGTAGTTGATCCTCTAATTGCTCAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGCACCTTCCCCAGGAAAATTTAAAGATGATTTCCGGAAGAAAGGTGCTCTGGCTGGGGGAGGACGAAGAAGACGAATTTTGGATGATGACGATGTGATTCAGGACGCATCAGAACTTGATGTCTCTATTCCTGGTGCCGCAACAGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCACGACTTCAGGCTGCTAGGGATGCAGCTCCTGTCAAAGTAGAAATTTTGGAGGTTGGTGACAGTGGTATGCTGGTGGAGGAATTGGCATACTGTTTGGCCACCAGTGAAGGTGAAATCCTTGGTTATCTGTACTCCAAGGGGATTAAACCAGATGGGGTACAGACTATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTATGATGTTGAAGTCATAGATGCAGACCCAGTCAAAGTGGAAGGTTTAGTGAAGAAAAGAGAAATTCTTGACGAAAATGACCTTGATAAACTCAAAGATAGGCCTCCTGTTATTACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCCTATAAAGTGCAAGTACCTTTTGATGGCAAAACGTTGCCCTGTGTTTTCCTTGACACTCCTGGACATGAGGCATTTGGAGCGATGAGAGCTCGTGGAGCAAGTGTAACAGACATTGCTGTTATTGTTGTGGCTGCTGATGATGGAATTCGTCCTCAAACAAATGAAGCTATTGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTCATGCAGGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTAACACCCCAATGGTTCCGATAAGTGCTCTTAAAGGGAAGAATGTGGATGATCTCTTAGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCAAAGGGAACAGTCATCGAGGCCGGGCTAGATAAATCGAAGGGACCATTTGCTACATTTATTGTGCAGAATGGCTCCCTTAGACGGGGTGACATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCATTATTTGATGATGGTGGAAAGCGTGTTGATGAAGCTACACCTTCTGTACCTGTACAGGTTATTGGATTGAATAATGTTCCTATTGCCGGTGATGAATTTGAGGTTGTTGAATCCCTTGATGCTGCACGTGAAAGGGCAGAGACTCGTGCTGAGTCATTGCGAAATGAGCGTATTTCAGCTAAGGCAGGAGATGGCAAGATCACTCTTTCTTCCTTAGCTTCGGCAGTTTCCTCAGGAAAGCAGTCTGGACTTGACTTGCATCAACTAAATGTTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTAAGAAAAGCTCTGCAGGTGCTACCACAAGAAAATGTCACACTAAAGTTTTTGTTGGAAGCAACAGGTGATGTAAACACTAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTGTGGGCTTTAATGTGAAAGCACCAGGCTCTGTGAAAAGTTATGCTGATAACAAAGCGGTTGAGATTAGATTATACAGAGTTATTTATGAATTAATTGATGACGTAAGAAAGGCAATGGAAGGGCTCCTAGAACCAGTTGAGGAACAATTAACAATTGGTTCAGCAGTAGTACGAGCTGTATTCAGCAGCGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAGGGAAAGGTGCTAAAAGATTGTGGTATTCGAGTCAAGCGGAAGGGAAAAGTAATTCATGTTAGTATTATTGATTCTTTGAGACGAGTGAAGGAAATTGTTAAAGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTGGAAGACTTTGATGATTGGGAAGAGGGTGACATAATTGAAGCCTTCAACACAATTGAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCACTGTAG 3057 0.4419 MLILVGSKQGTMSSLASPVSLGSLMGVSSSGRSHSGVRRVSFSRGNCKGRKRWHCLSLSVCRYSVTTTDFIADQGNSVSLDSNSNSSSSSKGAGDDGTGFVLKPPPKPVLKAPENRDGPILGPSRTTGDVEERNKVIESLGEVLEKAEKLGSSKVNGDKNNGSANKPIRNNAGASPRTEKPVNSAASLKSKTLKSVWRKGDSVASVQKVVKEVPKPSYNKNEEEKSQTGGGEKLVSQTRAPQPPSKPQPLKPQQPSKPQPALLSKPSIAPPPVKKPVVLRDKGAAETSVKSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPSPGKFKDDFRKKGALAGGGRRRRILDDDDVIQDASELDVSIPGAATARKGRKWSKASRKAARLQAARDAAPVKVEILEVGDSGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPVKVEGLVKKREILDENDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVQVPFDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGNTPMVPISALKGKNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGSLRRGDIVVCGEAFGKVRALFDDGGKRVDEATPSVPVQVIGLNNVPIAGDEFEVVESLDAARERAETRAESLRNERISAKAGDGKITLSSLASAVSSGKQSGLDLHQLNVILKVDLQGSIEAVRKALQVLPQENVTLKFLLEATGDVNTSDVDLAVASKAIIVGFNVKAPGSVKSYADNKAVEIRLYRVIYELIDDVRKAMEGLLEPVEEQLTIGSAVVRAVFSSGSGRVAGCMVTEGKVLKDCGIRVKRKGKVIHVSIIDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDIIEAFNTIEKKRTLEEASASMAAAVEGVGVAL 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00547 1018 Gene3D - 797 902 IPR036925 -
Phco10g00547 1018 FunFam Translation initiation factor IF-2 797 902 - -
Phco10g00547 1018 ProSitePatterns Initiation factor 2 signature. 951 973 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Phco10g00547 1018 NCBIfam translation initiation factor IF-2 412 1000 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Phco10g00547 1018 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 489 662 IPR000795 GO:0003924|GO:0005525
Phco10g00547 1018 Pfam Translation-initiation factor 2 795 890 IPR023115 -
Phco10g00547 1018 SUPERFAMILY Translation proteins 665 749 IPR009000 -
Phco10g00547 1018 MobiDBLite consensus disorder prediction 75 133 - -
Phco10g00547 1018 CDD IF2_mtIF2_II 669 763 IPR044145 -
Phco10g00547 1018 MobiDBLite consensus disorder prediction 75 94 - -
Phco10g00547 1018 FunFam Translation initiation factor IF-2 665 783 - -
Phco10g00547 1018 NCBIfam small GTP-binding protein domain 491 652 IPR005225 GO:0005525
Phco10g00547 1018 MobiDBLite consensus disorder prediction 279 300 - -
Phco10g00547 1018 Gene3D - 486 664 IPR027417 -
Phco10g00547 1018 CDD mtIF2_IVc 908 990 - -
Phco10g00547 1018 Coils Coil 748 775 - -
Phco10g00547 1018 PRINTS GTP-binding elongation factor signature 561 572 IPR000795 GO:0003924|GO:0005525
Phco10g00547 1018 PRINTS GTP-binding elongation factor signature 493 506 IPR000795 GO:0003924|GO:0005525
Phco10g00547 1018 PRINTS GTP-binding elongation factor signature 545 555 IPR000795 GO:0003924|GO:0005525
Phco10g00547 1018 PRINTS GTP-binding elongation factor signature 597 606 IPR000795 GO:0003924|GO:0005525
Phco10g00547 1018 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 195 1006 IPR015760 -
Phco10g00547 1018 Pfam Elongation factor Tu GTP binding domain 494 654 IPR000795 GO:0003924|GO:0005525
Phco10g00547 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 665 IPR027417 -
Phco10g00547 1018 MobiDBLite consensus disorder prediction 242 256 - -
Phco10g00547 1018 Gene3D Translation factors 665 780 - -
Phco10g00547 1018 Gene3D Translation factors 903 999 - -
Phco10g00547 1018 Hamap Translation initiation factor IF-2 [infB]. 8 998 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Phco10g00547 1018 MobiDBLite consensus disorder prediction 320 341 - -
Phco10g00547 1018 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 796 908 IPR036925 -
Phco10g00547 1018 CDD IF2_eIF5B 492 658 - -
Phco10g00547 1018 SUPERFAMILY Translation proteins 905 998 IPR009000 -
Phco10g00547 1018 MobiDBLite consensus disorder prediction 154 191 - -
Phco10g00547 1018 FunFam Translation initiation factor IF-2 902 999 - -
Phco10g00547 1018 FunFam Translation initiation factor IF-2 486 664 - -
Phco10g00547 1018 MobiDBLite consensus disorder prediction 215 229 - -
Phco10g00547 1018 MobiDBLite consensus disorder prediction 148 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00547 Phco-Chr10 5991160 5999584 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00547 10 5991160 5999584 Phco10g00547 10 5991160 5999584 ECH