Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00545 ATGGAAGAACCCGCATTGTTGTTCCCAGACACGGACTTGGATCTCAGTTTTACCAGCACCACCACCGACCGCACCAGCGCCCGAACCAGCCTCGCTCGAACCAGCAGCCTCACACTCAGCTTCAACGATCGTATCTCCACCGTCGAGCCCACCATCTCCGTCGTCAACCGTCGCCCCCACCGTAGCTCCGACCCCCACTGGACCGCCATCAAGGCCGCCACCATGCTCTCCTCCGACGGCCGCCTCCACCTCCGCCATCTTAAGCTCCTCCGCCACCTCGGCTCCGGCAACCTCGGCCGCGTGTTCCTCTGCCGCCTCCGCGACTACGACGGCGCCAACTTCGCCCTCAAAGTCGTCGACAAAGACCTCCTCACCCCCAAAAAACTCTCGCACGCAGAAACCGAGGCCGAAATCCTCCAAGCGCTCGATCATCCCTTCCTCCCCACGCTCTACGCGCGCATCGACGTCTCCCACTACACGTGCCTCCTCATGGACTACTGCCCCGCCGGGGACCTCCACTCCCTCCTCCGAAAACAGCCCCACCACCGGCTCCCCCTCTCGGTAGCGCGTTTCTTCGCCGCCGAGGTCCTCGTGGCTCTCGAGTACCTCCACGCGCAAGGAATCGTCTACCGCGACCTCAAACCCGAGAACGTTCTCTTGCGCGAAGACGGCCACGTCATGCTCTCGGATTTCGATCTCTGCTTCAAATCCGACGTGGCACCCAGCGTCACTCTCCGGACCCACAGCAAACCCCCTCGTGCGGGTCCCACCAACGGTTGCTTCAGTTATAACCGTCGCCCCTACAAACAACACCAACAAACGCTCCTCGCGGAGTTCATTGCGGAACCCGTGACGGCGTTTTCACGGTCGTGCGTGGGGACGCACGAGTACCTCGCGCCCGAGCTCGTCTCCGGTAACGGTCACGGTAACGGCGTGGACTGGTGGGCTTTCGGGGTTTTCGTTTACGAGTTGCTGTACGGGACGACGCCGTTTAAGGGGTGCAACAAGGAGGGCACCCTGCGCAACATAGCGTCGTGCAAGGACGTGAGATTCGTCCACGTGGCGGAAGGAGAAGAGCCTGGGATGGCTGAGGCTAGGGATTTGATTGAGAAGCTGTTGGTGAAGGATCCAAGGCGGAGGCTAGGGTGCACCAAGGGTGCCACTGATGTTAAACGACACCCCTTTTTTGATGGGATTAAGTGGCCGTTGATTCGAACTTACCGGCCACCGGAAGTAAAGGGATTGGTGAGAAGGAACAAGTCGCATGTGAGTGGTCACGTGAGTTACAAGAGAAAGAGGTGGTCGTGGAAGACACTTGCCCATGTCCTTCGGAAATATAATTTGATTCCAAACTATAGTAATAATAATAATAACAATTATTATCACTATGTTGATGATAGTTATAAGGTTAATTAA 1416 0.577 MEEPALLFPDTDLDLSFTSTTTDRTSARTSLARTSSLTLSFNDRISTVEPTISVVNRRPHRSSDPHWTAIKAATMLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDYDGANFALKVVDKDLLTPKKLSHAETEAEILQALDHPFLPTLYARIDVSHYTCLLMDYCPAGDLHSLLRKQPHHRLPLSVARFFAAEVLVALEYLHAQGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVAPSVTLRTHSKPPRAGPTNGCFSYNRRPYKQHQQTLLAEFIAEPVTAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFVYELLYGTTPFKGCNKEGTLRNIASCKDVRFVHVAEGEEPGMAEARDLIEKLLVKDPRRRLGCTKGATDVKRHPFFDGIKWPLIRTYRPPEVKGLVRRNKSHVSGHVSYKRKRWSWKTLAHVLRKYNLIPNYSNNNNNNYYHYVDDSYKVN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00545 471 Gene3D Transferase(Phosphotransferase) domain 1 289 410 - -
Phco10g00545 471 FunFam Serine/threonine-protein kinase OXI1 171 238 - -
Phco10g00545 471 Gene3D Phosphorylase Kinase; domain 1 86 170 - -
Phco10g00545 471 PANTHER FLIPPASE KINASE 1-RELATED 30 416 - -
Phco10g00545 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Phco10g00545 471 Gene3D Transferase(Phosphotransferase) domain 1 171 237 - -
Phco10g00545 471 ProSiteProfiles Protein kinase domain profile. 87 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00545 471 FunFam Serine/threonine-protein kinase OXI1 286 414 - -
Phco10g00545 471 SUPERFAMILY Protein kinase-like (PK-like) 62 415 IPR011009 -
Phco10g00545 471 Pfam Protein kinase domain 89 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00545 471 SMART serkin_6 87 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco10g00545 471 FunFam Serine/threonine-protein kinase WAG2 86 170 - -
Phco10g00545 471 CDD STKc_phototropin_like 94 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00545 Phco-Chr10 5966576 5967991 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco10g00545 Pkinase 1.7e-54 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00545 10 5966576 5967991 Phco10g00545 10 5966576 5967991 ECH