Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00524 ATGGAGGTCACCAATGTCAGTGAGTATGAGGCTATTGCAAAGCAGAAATTACCAAAGATGGCGTTTGACTACTACGCATCTGGTGCAGAGGATCAATGGACTCTGCAAGAGAACAGAAATGCCTTTTCCAGAATTTTGTTTCGGCCTCGTATTCTTATCGATGTGAGCAAGATAGACATGACAACTACTGTCTTGGGCTTCAAAATATCCATGCCAATCATGATTGCCCCAACAGCCTTTCAGAAAATGGCTCATCCCGAGGGAGAATATGCCACAGCAAGAGCTGCCTCTGCAGCTGGAACAATCATGACTTTGTCCTCGTGGGCCACTTCAAGTGTTGAAGAGGTGGCTTCAACAGGACCTGGCATTCGCTTTTTCCAGCTATATGTGTACAAGGACAGGAATGTGGTTGCTCAACTTGTGAGAAGAGCTGAAAGGGCTGGATTCAAAGCCATTGCCCTTACAGTTGATACTCCAATACTAGGACGCAGAGAAGCTGATATCAAGAACAGATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAAGCTGATGACTCTGGACTTGCTTCATATGTTGCTGGCCAAATTGATCGCACTCTAAGTTGGAAGGATGTGAAGTGGCTTCAAACAATCACCTCTCTCCCAATTCTGGTGAAGGGTGTGCTGACTGCAGAGGACACAAGGATAGCTGTACAAAGTGGTGCAGCTGGAATTATAGTGTCCAATCATGGAGCTAGACAACTTGACTATGTTCCAGCCACCATAGCAGCATTAGAAGAGGTTGTCAAAGCTGCTGAAGGTCGTCTTCCTGTCTTTCTGGATGGTGGAGTTCGCCGTGGAACTGATGTCTTCAAGGCATTGGCACTTGGTGCCTCTGGCATATTTATTGGACGCCCTGTGGTGTTCTCCTTGGCTGCTGAAGGAGAGGCTGGTGTAAGAAAAGTGTTGCAGATGCTACGTGAAGAGTTTGAGCTAACCATGGCCTTGAGTGGTTGTCGTTCACTAAAGGAGATCACTCGTGATCACATTGTGGCTGATTGGGACCAGCCTCGCGCTCACCCTCGCACCCGTGCGTTATTGTGA 1116 0.4722 MEVTNVSEYEAIAKQKLPKMAFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPILGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITSLPILVKGVLTAEDTRIAVQSGAAGIIVSNHGARQLDYVPATIAALEEVVKAAEGRLPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVADWDQPRAHPRTRALL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00524 371 PIRSF Al-hdrx_acd_dh 1 359 IPR012133 GO:0010181|GO:0016491
Phco10g00524 371 PANTHER S -2-HYDROXY-ACID OXIDASE-RELATED 2 361 - -
Phco10g00524 371 ProSiteProfiles FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. 1 359 IPR037396 -
Phco10g00524 371 Pfam FMN-dependent dehydrogenase 13 354 IPR000262 GO:0016491
Phco10g00524 371 ProSitePatterns FMN-dependent alpha-hydroxy acid dehydrogenases active site. 252 258 IPR008259 GO:0016491
Phco10g00524 371 SUPERFAMILY FMN-linked oxidoreductases 2 355 - -
Phco10g00524 371 CDD alpha_hydroxyacid_oxid_FMN 7 351 IPR012133 GO:0010181|GO:0016491
Phco10g00524 371 Gene3D Aldolase class I 1 369 IPR013785 -
Phco10g00524 371 FunFam peroxisomal (S)-2-hydroxy-acid oxidase GLO1 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00524 Phco-Chr10 5714271 5717614 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00524 10 5714271 5717614 Phco10g00524 10 5714271 5717614 ECH