Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00521 ATGGCTGCGGTTGCTGAGATTCCAGCTGATGCCAACAAAATGGATTCAAAACCTAAGGCTGAATCTGAATTCAGTGTCCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCCCTGGCGAAGGAGTTTTTCCCTTCATCATATCCTCCCAATCATGATCATCGCCTTCAGGGCTTTAATCAGCTCTCACCAACCCACTTTCTGGTCAACTCTAAACCTTCTGCTAATGAGAATTTCGCAAACAATCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGAAGGAGGGTGAGTGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGAGGCTTGCAGCATTATTCAGCAGTTGTGGACAAGTAATTGATTGCCGAATTTGTGGCGACCCACATTCTGTTCTCCGTTTTGCTTTTGTTGAGTTTGCGGATGAGTATGGTGCTAGAACAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTGAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACATTCCTCCCTAGGTCTGATGATGAGCGCGAAATGTGTGCCCGAACTGTCTATTGTACAAATATTGATAAGAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGCGGTGAGGTTACACGCCTGAGGCTTTTGGGTGACCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGTAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGCATGCTCTTGGGAACCCAGCCGATAAGGGTGAGTCCTTCAAAGACTCCTGTGAGGCCAAGGGTCACTCGTCCAGCATCCATTAACTGA 894 0.4396 MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYPPNHDHRLQGFNQLSPTHFLVNSKPSANENFANNRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFVMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTRPASIN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00521 297 CDD RRM1_CID8_like 109 188 IPR034823 -
Phco10g00521 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 186 IPR000504 GO:0003723
Phco10g00521 297 MobiDBLite consensus disorder prediction 1 20 - -
Phco10g00521 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 277 IPR000504 GO:0003723
Phco10g00521 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Phco10g00521 297 SUPERFAMILY RNA-binding domain, RBD 72 184 IPR035979 GO:0003676
Phco10g00521 297 Pfam Ataxin-2 C-terminal region 32 47 IPR009818 -
Phco10g00521 297 SUPERFAMILY RNA-binding domain, RBD 198 290 IPR035979 GO:0003676
Phco10g00521 297 FunFam Polyadenylate-binding protein-interacting protein 10 202 280 - -
Phco10g00521 297 CDD RRM2_CID8_like 204 285 IPR034825 -
Phco10g00521 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 32 290 - -
Phco10g00521 297 Gene3D - 69 187 IPR012677 -
Phco10g00521 297 Gene3D - 196 290 IPR012677 -
Phco10g00521 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 284 IPR000504 GO:0003723
Phco10g00521 297 SMART rrm1_1 209 280 IPR000504 GO:0003723
Phco10g00521 297 SMART rrm1_1 112 182 IPR000504 GO:0003723
Phco10g00521 297 FunFam Polyadenylate-binding protein-interacting protein 11 75 188 - -
Phco10g00521 297 MobiDBLite consensus disorder prediction 73 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00521 Phco-Chr10 5525061 5531176 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00521 10 5525061 5531176 Phco10g00521 10 5525061 5531176 ECH