Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00504 ATGGATAAATCAGAGGCGACTCCACAGCGGCAGCAACAACAGCAGCAGCAACAGCAGCAGCATGTGATGGGAGTTGCTGCAGGTGCTAGCCAAATGGCCTATTCTCACTACCAGACTGCTCCCATGGTGGCTGCTGGCACACCTGCCGTAGCTGTACCTTCTCCAACGCAGGCTCCTGCTGCCTTCTCTGGTTCTGCTCACCAGCTTGCTTACCAGCAAGCACAGCATTTTCACCATCAACAACAGCAGCACCAACAACAGCAGCTGCAAATGTTCTGGTCAGATCAAATGCAAGAAATCGAGCAAACAATTGACTTTAAAAACCACAGTCTCCCTCTTGCTCGAATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAGAGGAGAACCTTACAAAAGAATGATATAGCAGCTGCTATTTCAAGAAATGATGTTTTTGATTTCTTGGTTGATATTATTCCTAGAGATGAATTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCATTAGTGGGTCCACCCGCTGATATGCCCTATTACTATGCCCCTCCACAGCATCCTGTGGGACCTCCTGGGATGATCATGGGGAAGCCAGTTGATCAAGCAGCGCTATATTCTACACAGCAGCCTCGACCTCCCATGGCTTTCATGCCATGGCCCCATACACAACCCCAGCCACAGCATTCACCCCAACAACAAACAGATTCATGA 816 0.4645 MDKSEATPQRQQQQQQQQQQHVMGVAAGASQMAYSHYQTAPMVAAGTPAVAVPSPTQAPAAFSGSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSDQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGPPADMPYYYAPPQHPVGPPGMIMGKPVDQAALYSTQQPRPPMAFMPWPHTQPQPQHSPQQQTDS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00504 271 Gene3D Histone, subunit A 71 188 IPR009072 GO:0046982
Phco10g00504 271 FunFam Nuclear transcription factor Y subunit gamma 75 188 - -
Phco10g00504 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 58 252 - -
Phco10g00504 271 SUPERFAMILY Histone-fold 67 182 IPR009072 GO:0046982
Phco10g00504 271 MobiDBLite consensus disorder prediction 243 271 - -
Phco10g00504 271 MobiDBLite consensus disorder prediction 7 24 - -
Phco10g00504 271 Pfam Core histone H2A/H2B/H3/H4 76 173 IPR007125 GO:0003677
Phco10g00504 271 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00504 Phco-Chr10 5257542 5258357 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phco10g00504 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00504 10 5257542 5258357 Phco10g00504 10 5257542 5258357 ECH