Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00493 ATGGTACACCTAGTTGCTGTTGCACACCATTCCTTTCACTCACTGGATGCCATGTCTCTCTCACGTCTCATCACTCCTCTCTTCTGCAGTTCTTCAACTTCAGATTCTTTGGTGGCTGCATCATATGTGAAGGAGAAAATGGAGAATACTTCCTGGTGCCTTGCGGACTCAAAAGAAAGAATCAGGAAAATGTTCAACAAGGTTGAACTTTCGATTTCTTCATATGATACAGCTTGGGTGGCAATGATAACCTCTCCAGCTTCCCCTCATACCCCACTTTTCCCTCAGTGCTTAAATTGGTTGTTGGCTAATCAACTCTTAGATGGTTCTTGGGGTCTTCCTGATCGCCATCCATTACTAATGAATGATGCTCTCTTATCTACCTTAGCATGCATCCTTGCTCTAAAGCAATGGGGTGTTGGAGAAGATCAAATTAACAGGGGTCTTCAGTTTATTGAGTCAAACATTACCTCAATCAAAGATGAGATGCAGCACCTTCCCATAGGATTTGGTATCAATTTTCCTTCTTTGATCGAATATGCACAAAATTTGGGCATTAATCTTCCAATTGGAGCTACACTATTGGACACAATGGTCCAAAAGAGAGAAATAGAACTCCAAAGAGGTACTGAAAGCAATTCAGAAGGGTGGAGGGCCTATCAAGCATATGTTTCAGAAGGAATGCTGGATTCACAAGATTGGAAAACAATCATGAAATATCAAAGAAAGAATGGATCTTTGTTTAATTCACCTGCTACAACAGCAGCTGTTTTTCAGCGCCTTAAGAATGCTGAATGTCTTGGTTACCTCCAATCTGTACTAGAAAAGTTTGGAAATGCAGTTCCGACAATTCACCCTCTGGATGTATATGCTCGTCTCTGTATGATTGATAGTCTTGAAAGGTTGGGTATTAATCATCATTTCAAAGAGGAAATTCGTAGTGTATTGGATGATACATACAGATTTTGGGTGCAAGGAGTGGAAGATATATTCTTAGATCCCACCACCTGTGCAATGGCATTTCGTATCTTGCGTCTCAATGGCTATGATGTATCTTCAGATCCATTTTATCAATATTCTGAAGATAAATTTGCTGACTCCTTGAAAGGGTACTTGAAGGATGTTTGTGCTGTAATAGAGCTATATAGGGCTTCACAAACCATTATACATCCTGATGAATCCATTTTGGTGAGACAGAGTTTGTGGACGAAACAGCTTCTGAAGCAGGAATCCTCCCCTTACAGATTATATGCTGATAAGCTTCGTAGTTATGTCGACCAAGAGGTCAAGGATGTTCTTAATTTTCCTCATCATGCAAATTTGGAGCGATTGTTAAACAGGAGATCAATGGAGTATTACAACGTAGAAGAAACAAGAATTTTAAAATCATCGTATAGATCATGCAATCTTGCAAACCAAGAAATTCTAAAGCTAGCAGCAGAAGACTTCAATATCTGCCAATCAATACACATTGAAGAGTTGAAACAGCTTTCCAGATGGGTTGTTGAGAGCAGACTAGACAAACTAACATTTGCCAGACAGAAACTGGCTTATTGTTACTTCTCCGGTGCTGCTACACTTTTCTCCCCTGAACTTTCTGATGCTCGCATATCCTGGGCGAAAAATGGGGTGCTCACAACAGTTGTTGATGATTTCTTTGATGTTGGGGGTTCTGAAAAGGAACTAGTGGACCTTATTCAACTTGTTGAGAAGTGGGATGTAGATATCAACACTGTTTGTTGTTCTGAGACAGTTAAGATTATATTTTCCGCAATTCGCAGCACAGTTTGTGAGATTGGAGAGAAATCAGTCAAGCGACAAGGACGCAATGTGAAAAATAATGTTATCAAAATTTGGTTAGATCTGATTCAGTCAATGTATAAAGAAGCTGAGTGGTTGCGAACAAAGACGGTGCCAACAATTGATGATTATTTGGAAAATGCATACATATCATTTGCCTTAGGTCCAATTGTACTTCCTGCCCTCTATCTTGTTGAACCTAAGCTTTCAGATGAAGATGCTGAAAGTCATGAGTTGAACCATCTGTATAAACTCATGAGTACATGCGGTCGTGTTCTTAATGACATTCACAGTTTTAAGAGAGAATCTGAGGAAGGGAAACTGAATGCACTGGCTCTGCTCATTGCTCATGGCAATGGAGTTTTTACTGTGGAAGATGCCATTGAAAAACTGAAGGGTATTGCTGAGGAAACGAGAACAGAACTCCTAAGATTAATTTTGCATGAAAAAGGAAGTGTAGTTCCCAGAGATTGCAAGGATTTGTTTTGGAAAATGATAAAAGTTTTACATCTATTTTACATGAAGGATGATGGATTTACTTCAAATGAAATGTACTCTAGTGTAAAGGCCGTGATTAAAGATCCTGTTATCTTTGATGAACTGTTAGCTCGGCAGCAGAACCTTAATTATGTCGAAGCTAGTAATGTGATGCCCCAGTCCAATTAG 2466 0.3946 MVHLVAVAHHSFHSLDAMSLSRLITPLFCSSSTSDSLVAASYVKEKMENTSWCLADSKERIRKMFNKVELSISSYDTAWVAMITSPASPHTPLFPQCLNWLLANQLLDGSWGLPDRHPLLMNDALLSTLACILALKQWGVGEDQINRGLQFIESNITSIKDEMQHLPIGFGINFPSLIEYAQNLGINLPIGATLLDTMVQKREIELQRGTESNSEGWRAYQAYVSEGMLDSQDWKTIMKYQRKNGSLFNSPATTAAVFQRLKNAECLGYLQSVLEKFGNAVPTIHPLDVYARLCMIDSLERLGINHHFKEEIRSVLDDTYRFWVQGVEDIFLDPTTCAMAFRILRLNGYDVSSDPFYQYSEDKFADSLKGYLKDVCAVIELYRASQTIIHPDESILVRQSLWTKQLLKQESSPYRLYADKLRSYVDQEVKDVLNFPHHANLERLLNRRSMEYYNVEETRILKSSYRSCNLANQEILKLAAEDFNICQSIHIEELKQLSRWVVESRLDKLTFARQKLAYCYFSGAATLFSPELSDARISWAKNGVLTTVVDDFFDVGGSEKELVDLIQLVEKWDVDINTVCCSETVKIIFSAIRSTVCEIGEKSVKRQGRNVKNNVIKIWLDLIQSMYKEAEWLRTKTVPTIDDYLENAYISFALGPIVLPALYLVEPKLSDEDAESHELNHLYKLMSTCGRVLNDIHSFKRESEEGKLNALALLIAHGNGVFTVEDAIEKLKGIAEETRTELLRLILHEKGSVVPRDCKDLFWKMIKVLHLFYMKDDGFTSNEMYSSVKAVIKDPVIFDELLARQQNLNYVEASNVMPQSN 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00493 821 SUPERFAMILY Terpenoid synthases 472 796 IPR008949 -
Phco10g00493 821 FunFam cis-abienol synthase, chloroplastic 71 274 - -
Phco10g00493 821 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 243 457 IPR008930 -
Phco10g00493 821 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 54 795 - -
Phco10g00493 821 Pfam Terpene synthase, N-terminal domain 233 415 IPR001906 GO:0010333|GO:0016829
Phco10g00493 821 Pfam Terpene synthase family, metal binding domain 476 740 IPR005630 GO:0000287|GO:0010333|GO:0016829
Phco10g00493 821 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 74 264 IPR008930 -
Phco10g00493 821 CDD Terpene_cyclase_plant_C1 286 795 IPR044814 GO:0010333|GO:0016102
Phco10g00493 821 Gene3D Farnesyl Diphosphate Synthase 486 802 IPR008949 -
Phco10g00493 821 Gene3D - 63 483 IPR036965 GO:0010333|GO:0016829
Phco10g00493 821 FunFam Ent-kaur-16-ene synthase, chloroplastic 486 798 - -
Phco10g00493 821 FunFam Ent-copalyl diphosphate synthase, chloroplastic 265 483 - -
Phco10g00493 821 SFLD Terpene Cyclase Like 1 N-term 46 466 - -
Phco10g00493 821 Gene3D - 71 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00493 Phco-Chr10 5014621 5020646 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00493 10 5014621 5020646 Phco10g00493 10 5014621 5020646 ECH