LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco10g00491	ATGGCAGCACAGAACCTTTGCTTCATGGCAATGAGATCGTCAAAGCTTCTCTCTCGCCCTTCCTATCTTCTCTCTGTTCAGATGCAGATGCTGTCTTCTTTTCCTCCCCACACCCGAAAGATGAGCATGGATGCACAAAGTGTTGCTTCCAAGCTTACTAGTTCTGGACTGCTGAGGACTCAGGGCCTTATTGGAGGGAAATGGATTGACGCTTATGATGGAAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATTGTAGATGTTGCGTGCATGGGTGGAAGAGAGACAAATGATGCAATTTCTGCAGCCTATGAAGCATATCGATCATGGAGCAAAACCACTGCTGCTGAAAGAAGCAAATTTTTGAGGAAATGGTATGATTTGCTAATGATACATAAAGAAGAACTTGCACAACTTATAACCTTGGAGCAGGGGAAAACTCTTAAAGAGTCTATTGGTGAGATAAACTATGGGGCCGCATTTATTGAGTTTTCAGCTGAGGAGGCAAAACGTTTATATGGGGATATAATTCCTGCACCTTTATCCGATCGGAGATTATTTGTTCTTAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTGGCTATGATTACTAGAAAGGTTGGTCCCGCCCTTGCATGTGGCTGTACAGTGGTCGTAAAACCCTCTGAACTTACCCCTCTCACTGCTTTAGCTGCTGCAGAACTCTCCATTCAAGCTGGAATACCAGCGGGTGTCGTGAATGTTGTAATGGGAAATGCTCCAGATATTGGGGATGCTTTACTTGCAAGTCCACAGGTAAGAAAGATCACATTCACAGGCTCGACGGCTGTTGGAAAGAAATTAATGGCTGGGTCAGCTGAGACAGTTAAAAGAGTATCTTTAGAACTTGGTGGCAATGCGCCTTGCATTATTTTTGATGATGCTGACCTTGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCAAATAGAATTATTGTACAAGAAGGTATATATGAGAAATTTGAAAATGCACTCTGTGATGCTGTTCAGAGTATGAAAGTTGGGGATGGTTTTAGTGAAGGTGTGACACAGGGCCCTCTAATCAATGAAGCTGCTGTGGAAAAGGTTGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTACTGGGGGTAAAAGACATAGCCTTGGATTTACTTTTTATGAACCTACGGTGATCAGTGATGTCAACAATGAGATGCGCATATCCAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACCAACGCAGGTTTGGGTTCATACGTCTTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAAGCTCTAGAATATGGACTTGTAGGTGTTAATGAAGGAGTATTTTCTACTGAGGTGGCTCCTTTCGGTGGTTTTAAACAGTCGGGGCTCGGAAGAGAAGGCTCCAAATATGGAATGGATGAATATTTAGAGATAAAATATGTCTGCTTGGGAAACATGAACAAAGAATGA	1608	0.4272	MAAQNLCFMAMRSSKLLSRPSYLLSVQMQMLSSFPPHTRKMSMDAQSVASKLTSSGLLRTQGLIGGKWIDAYDGKTIKVYNPATGESIVDVACMGGRETNDAISAAYEAYRSWSKTTAAERSKFLRKWYDLLMIHKEELAQLITLEQGKTLKESIGEINYGAAFIEFSAEEAKRLYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVVKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPDIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKRVSLELGGNAPCIIFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQEGIYEKFENALCDAVQSMKVGDGFSEGVTQGPLINEAAVEKVESLIHDATSKGAKVITGGKRHSLGFTFYEPTVISDVNNEMRISREEAFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVFSTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMNKE	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco10g00491	535	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	53	532	-	-
	Phco10g00491	535	SUPERFAMILY	ALDH-like	54	533	IPR016161	GO:0016491
	Phco10g00491	535	FunFam	Succinate-semialdehyde dehydrogenase I	74	317	-	-
	Phco10g00491	535	FunFam	Succinate-semialdehyde dehydrogenase I	307	496	-	-
	Phco10g00491	535	NCBIfam	succinate-semialdehyde dehydrogenase	79	525	IPR010102	GO:0009013\|GO:0009450
	Phco10g00491	535	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	303	310	IPR029510	GO:0016491
	Phco10g00491	535	CDD	ALDH_F5_SSADH_GabD	79	529	-	-
	Phco10g00491	535	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	331	342	IPR016160	GO:0016491
	Phco10g00491	535	Pfam	Aldehyde dehydrogenase family	68	527	IPR015590	GO:0016491
	Phco10g00491	535	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	307	496	IPR016163	GO:0016620
	Phco10g00491	535	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	74	521	IPR016162	GO:0016491
	Phco10g00491	535	FunFam	Aldehyde dehydrogenase, putative	499	525	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco10g00491	Phco-Chr10	4959889	4987135	Transposed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco10g00491	10	4959889	4987135	Phco10g00491	10	4959889	4987135	ECH