Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00286 ATGGATGGAACAGTTTTTTGCTACCTCTTGTGGTCGATCCGCGTGATCAGTTTCTGCTTGGTCAATTGGGGTGTCTTGGATTGTTTGGGGACTTGCAAAAAATGGCTGCTGGGGGTTGGTTGTACAAGCATGACATCTAGTCATCCATTCTTTGATGATATACGAAGCAGATCAAGTGTTGATCCTCCTCAAACGGAAGAGCCAACTGAAATTGGTGAACTTGTGAATGAGCCTCTGCAGACTTCTCTTAAGCCTCATGGGACTGTTACAAGCAGTGTTCGTGAGCTGTTAGAGTGCCCTGTTTGTTTAAATGCTATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGCCCTACATGTAGGCATGAGCTTGGCAATATCAGATGTCTGGCACTGGAAAAGGTGGCTGCATCATTAGAACTTCCGTGTAAATATCAAGGTTTTGGGTGCATGGGCATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGACCTTACAATTGTCCATATGCTGGTTCAGAATGTTCTGTTATGGGTGATATACCTTACCTGGTGACCCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGTACTTTTAATCACCGTTATGTCAAAACAAACCCACAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTATTTCTGTCTACACTTTGAAGCTTTTCAGCTGGGAATGGCTCCTGTCTACATAGCTTTTTTGCGGTTCATGGGGGATGACAACGAGGCGAAGAACTACACATACAGTCTGGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAGGGTGTGCCTAGAAGCATTAGGGATAGCCACCGGAAGGTTCGTGACAGTTTTGATGGTCTGATAATTCAGAGGAGCATGGCTCTATTCTTTTCTGGGGGTGACAAGAAGGAACTGAAACTAAGAGTAACTGGGAGAATTTGGAAAGAACAGTGA 1044 0.4435 MDGTVFCYLLWSIRVISFCLVNWGVLDCLGTCKKWLLGVGCTSMTSSHPFFDDIRSRSSVDPPQTEEPTEIGELVNEPLQTSLKPHGTVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVTHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDKKELKLRVTGRIWKEQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00286 347 FunFam E3 ubiquitin-protein ligase SINAT5-like 57 150 - -
Phco10g00286 347 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 77 346 - -
Phco10g00286 347 FunFam E3 ubiquitin-protein ligase SINAT3 151 207 - -
Phco10g00286 347 CDD Sina 213 341 - -
Phco10g00286 347 FunFam E3 ubiquitin-protein ligase SINAT5-like 208 340 - -
Phco10g00286 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 150 IPR013083 -
Phco10g00286 347 CDD RING-HC_SIAHs 97 135 - -
Phco10g00286 347 Pfam Seven in absentia protein family 141 340 IPR018121 GO:0005737|GO:0006511|GO:0007275
Phco10g00286 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 206 IPR013083 -
Phco10g00286 347 SUPERFAMILY TRAF domain-like 152 344 - -
Phco10g00286 347 ProSiteProfiles Zinc finger RING-type profile. 99 135 IPR001841 -
Phco10g00286 347 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 207 340 IPR008974 GO:0005515
Phco10g00286 347 ProSiteProfiles Zinc finger SIAH-type profile. 152 212 IPR013010 GO:0008270
Phco10g00286 347 SUPERFAMILY RING/U-box 89 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00286 Phco-Chr10 2626262 2629624 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00286 10 2626262 2629624 Phco10g00286 10 2626262 2629624 ECH
Phco10g00286 10 2626262 2629624 Phco9g02188 9 47293758 47297730 PCT