Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00285 ATGTCGTCGTCATCATTGGTAGAGTCTCTAGTTCTTCAACTCCATGAGATCTCAGCTGTCAAATTTGGCAACTTCAAGCTCAAATCTGGCATCTTCTCACCAATCTACATAGACCTGCGCCTCATCATATCTTACCCTTCTCTCCTCCAGCAAATCTCTCAAACCCTTATTTCCTCCGTCTCTTCCACTTCCTATGATCTTGTATGTGGTGTCCCTTACACTGCCTTACCAATTGCTACATGTGTCTCTCTTGCCCAAAGCATTCCTATGGTTATGCGCCGCAAGGAAATAAAAGATTATGGCACTGCTAAAGCTATAGAAGGTGATTTCAAGCCTGGCCAGAATTGCTTGATCATTGAGGATTTGGTTACAAGTGGCACATCGGTTTTGGAAACAGCAGCGCCACTGCGTGCTTCAGGGTTGAAGATCAGTGATGCTGTTGTCTTGATTGATAGAGAGCAAGGAGGGAGGGAAAATTTGGAGGAGAATGGCATCAAGCTGCATGCAATTATTAAATTGACTGATATGGTGAAAATTTTGAGTAATCATGGGAAACTTGGAGAGGAGATGGTTGGGGTTGTTATGAAGTTCTTAGAGGAGAATCGGAAGGTAGCAGCTCTGGCAAAGGTGGAGAAGCCTGCAACAAAGGTCAAGGCTTTGCCATTTGAGGAGAGGGCTAGGCTCTCAAAGAATCCAATGGGAAAGAGATTGTTTGAGATAATGGCTGCGAAGGCAAGTAATTTGTGTCTGGCTGCTGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGAGAAGGTTGGACCTGAGATTTGCCTGCTGAAGACTCATGTGGATATTTTTCCAGATTTTACTCCTGATTTTGGCTCAAAGCTTCTCTCGATTGCTGAAAAACATAACTTCTTGATCTTTGAGGATCGTAAATTTGCTGATATTGGTAACACAGTGACCATGCAATATGAAGGAGGGATCTTTCACATATTGGATTGGGCTCATATAGTAAATGCTCACATAATCTCAGGTCCTGGAATTGTTGATGGATTGAAGTTGAAGGGTTTACCTAGTGGCAGGGGTCTATTACTGCTTGCTGAAATGAGTTCAGCAGGTAACCTTGCCAAGGGAGATTATACCGCAGCTGCAGTAAAAATTGCTGAGGATCATTCTGACTTCGTAATTGGCTTCATCTCGGTCAATCCTGCATCATGGCCAGGAGCACCTATAAATCCCTCTTTCATTCAGGCAACCCCTGGAGTTCAAATGGTAACTGGTGGTGATGCTTTAGGCCAGCAATATAACACTCCATATTCAGTGGTTCATGATAGGGGCAGTGACATAATCATTGTTGGACGAGGCATCATCAAAGCAGCAAATCCTGCAGAGGCAGCACGTGAATACCGGGTTGAAGGGTGGAAAGCATATTTGGCTAAGTGTTCTTGA 1437 0.4398 MSSSSLVESLVLQLHEISAVKFGNFKLKSGIFSPIYIDLRLIISYPSLLQQISQTLISSVSSTSYDLVCGVPYTALPIATCVSLAQSIPMVMRRKEIKDYGTAKAIEGDFKPGQNCLIIEDLVTSGTSVLETAAPLRASGLKISDAVVLIDREQGGRENLEENGIKLHAIIKLTDMVKILSNHGKLGEEMVGVVMKFLEENRKVAALAKVEKPATKVKALPFEERARLSKNPMGKRLFEIMAAKASNLCLAADVGTAAELLEIAEKVGPEICLLKTHVDIFPDFTPDFGSKLLSIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWAHIVNAHIISGPGIVDGLKLKGLPSGRGLLLLAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSDIIIVGRGIIKAANPAEAAREYRVEGWKAYLAKCS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00285 478 CDD OMP_decarboxylase_like 248 465 - -
Phco10g00285 478 FunFam Uridine monophosphate synthetase 217 478 - -
Phco10g00285 478 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 303 316 IPR018089 GO:0004590|GO:0006207
Phco10g00285 478 FunFam Uridine monophosphate synthetase 3 207 - -
Phco10g00285 478 NCBIfam orotate phosphoribosyltransferase 14 175 IPR004467 GO:0004588
Phco10g00285 478 SMART OMPdecase_2 247 465 IPR001754 GO:0004590|GO:0006207
Phco10g00285 478 CDD PRTases_typeI 66 172 IPR000836 -
Phco10g00285 478 Gene3D Aldolase class I 215 478 IPR013785 -
Phco10g00285 478 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 251 IPR023031 GO:0004588|GO:0006221
Phco10g00285 478 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 246 465 IPR001754 GO:0004590|GO:0006207
Phco10g00285 478 NCBIfam orotidine-5'-phosphate decarboxylase 248 466 IPR014732 GO:0004590|GO:0044205
Phco10g00285 478 SUPERFAMILY Ribulose-phoshate binding barrel 220 474 IPR011060 -
Phco10g00285 478 Gene3D - 1 211 IPR029057 -
Phco10g00285 478 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 4 477 - -
Phco10g00285 478 SUPERFAMILY PRTase-like 4 197 IPR029057 -
Phco10g00285 478 Pfam Phosphoribosyl transferase domain 57 158 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00285 Phco-Chr10 2622586 2624967 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00285 10 2622586 2624967 Phco10g00285 10 2622586 2624967 ECH
Phco10g00285 10 2622586 2624967 Phco9g02187 9 47289774 47292583 PCT