Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00282 ATGGAGATGTCTGTTCAATCAGAAAATCCTAATACCAATGGTATTTCAGGATCAGGATCATGTCTTTATGATCTGTTTTGTTCTGAAAATCCTAGTTTTAATGCTCACGTTGTAAGAGAACAATGGATGTCTTCTGGTCCACAGAAAAGACTAGACAGTTTGATGCGTCAAGCTGGGAATAGGTATTGTGCCGATTGTGGAGCATTAGAGCCAAAATGGGTGTCTTTAAACCTTGGAGTATTTATTTGCATCAAATGTTCTGGAATACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTGTCCCTAAACCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAAATTGGGTGGAAATACAGTAGTCAACAAGAAGTATGAAGCTCAGTTGCCAACTAATAACATAAGAAAACCAAAACCAGATTCTTCTATTGAAGAGCGTTCAGATTTCATTAGGAGAAAATATGAGTGTCTGCAATTTTCTGATACTGAGGATAACATGTCTTGTCCCTTCATACCATCCCATTCAGGAAGTTCATCAGATTCTCAAATTAGTTACTCAAGAAATCCTTTCACACGAGAAAAAAAACATTGTGATATTAAACCACCAACTAGACACTTTATTGGCAGAACATTTCGAAATAGTCGAGGAAGAAAAGATTGTCATGACTTTAGGACTACAAAGAAGACCAACTCATTGGCAGGTATGATCGAATTTGTTGGGTTGATAAAGGTGAATGTGGTTAAGGGCACTAATCTTGCTGTTCGTGATGTGATGAGTAGTGATCCTTATGTGACCATATCTCTAGGTCACCAATCAGTGAAGACACGTGTCATAAAGAACAATTTAAACCCAATTTGGAATGAAAGCCTAATGTTGTCAATTCCTGATTGCATTCCTCCTCTTAAAATTATTGTGTTTGACAAAGATACTTTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTTTCAGCTGCAATGGCATATGAAAAATCTTCAGTGATTGATGAGAGTATGCAAGTTGGAAAATGGACAGCAAGTGGTGACAACACTCTTATTAAAGATGGTATCATTTCCCTTGAAGATGGACAAATCAAACAAGAGATCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGTTGGACATTGAACTTGAATGTGTTCCTTTAACTCAGTAG 1206 0.3731 MEMSVQSENPNTNGISGSGSCLYDLFCSENPSFNAHVVREQWMSSGPQKRLDSLMRQAGNRYCADCGALEPKWVSLNLGVFICIKCSGIHRSLGVHISKVLSLNLDEWTDEQVDALVKLGGNTVVNKKYEAQLPTNNIRKPKPDSSIEERSDFIRRKYECLQFSDTEDNMSCPFIPSHSGSSSDSQISYSRNPFTREKKHCDIKPPTRHFIGRTFRNSRGRKDCHDFRTTKKTNSLAGMIEFVGLIKVNVVKGTNLAVRDVMSSDPYVTISLGHQSVKTRVIKNNLNPIWNESLMLSIPDCIPPLKIIVFDKDTFSTDDFMGEAEIDIQPLVSAAMAYEKSSVIDESMQVGKWTASGDNTLIKDGIISLEDGQIKQEISLRLQHVERGVLDIELECVPLTQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00282 401 SMART arf_gap_3 49 171 IPR001164 GO:0005096
Phco10g00282 401 Pfam Putative GTPase activating protein for Arf 49 165 IPR001164 GO:0005096
Phco10g00282 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 41 401 IPR044518 GO:0005096|GO:0005543
Phco10g00282 401 SUPERFAMILY ArfGap/RecO-like zinc finger 48 163 IPR037278 -
Phco10g00282 401 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 242 401 - -
Phco10g00282 401 SMART C2_3c 245 340 IPR000008 -
Phco10g00282 401 CDD C2_ArfGAP 243 388 - -
Phco10g00282 401 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Phco10g00282 401 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Phco10g00282 401 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Phco10g00282 401 CDD ArfGap 51 158 - -
Phco10g00282 401 ProSiteProfiles C2 domain profile. 223 342 IPR000008 -
Phco10g00282 401 Gene3D Arf GTPase activating protein 33 171 IPR038508 -
Phco10g00282 401 ProSiteProfiles ARF GTPase-activating proteins domain profile. 48 171 IPR001164 GO:0005096
Phco10g00282 401 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 243 336 IPR035892 -
Phco10g00282 401 Pfam C2 domain 245 334 IPR000008 -
Phco10g00282 401 FunFam stromal membrane-associated protein 1 isoform X1 34 169 - -
Phco10g00282 401 Gene3D C2 domain 243 398 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00282 Phco-Chr10 2593638 2600506 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00282 10 2593638 2600506 Phco9g02186 9 47281984 47285846 PCT