Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00230 ATGAGAATGTCTCCACAAAGTGGTGTGATTCATTCACTTTTCATCACCATGTTTCTCTCATTTGGGGTGTGTTTTGGTTCTTTCCTAGAAGACACTTATCATTTAACTAATTACCAACATTACTCTATCAAACCAAATAATGAACATTTTGGTAACATCATGAAAAGGGCCTATGGATCCACACCTTCTGCAAGGTCTCAAAGAAGGATCAGTGTTGATGACTATGGAGCCAAAGCTAATGATGGAAGACATGACACTGAGGCATTTGAGAAGGCATGGAATGAGGCATGTTCTACAGGGGGTGTTCTTGTAGTCCCAGAAGCAAAAATCTACCATTTGAAGCCAATAACTTTTTCAGGACCATGCCATCCAAACACTGCCTTCAGGGTCTATGGAACAATCAAAGCATGGCCTAAAATATCAGCATATGGAAAACAAAGACTGCTATGGATTATGTTTCATAATCTCACCAATCTTAGAGTTGATGGTGGTGGCACCATCAATGGCAATGGTAGAAAATGGTGGGACAACTCTTGCAAAACCAATGAAAACCTTCCATGCAAACATGCCCCAACTGCGGTGACATTCTTTGGATGCAACAACTTGAGAGTGACAAACCTGAGGTTCAAAAATGCACAACAAATGCATATAAGGTTTCAAAAGTGTAACAATGTCACAGCTTCGAATTTGATCCTGAGAGCACCAGGGAACAGCCCCAACACTGATGGAATTCACGTTACTGAAACAAAAAATATAATGATAAGCAATAGTTCCATTGGGACAGGTGATGACTGTATTTCAATAGTGAGTGGGTCCCAGAATGTTCGAGTCATAGATGTTACATGTGGACCAGGCCATGGAATCAGCATTGGAAGCTTAGGAGCTGGTAACTCAGAAGCTCAAGTGTCGAATGTGTTAGTGAACAGAGCCACCATAACAGGAACCACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGATATGCGAAAAACATAAAATTTGAGAATATAGCAATGCGAAATGTGACAAATCCCATAATTGTAGATCAAAACTACTGCGACCAGGACAAGCCATGCAAAGAGAAGGTCTCAGCAGTGCAATTGAGTAACATTGTGTACCAAAACATCAGAGGAACCAGTGCTTCAGAAGTGGCAATCAAATTTGAGTGCAGCAAAACTTTCCCATGCAAAGGAATACACTTTCAAGATGTGATCTTAACACCACATGGCCATGGTGGCTCTAAAACCATTGCTACATGTGAAAATGTTAGATATGTTAATAGGGGAAAGTTTCTTCCTCCATGCTCTAATTGA 1320 0.4068 MRMSPQSGVIHSLFITMFLSFGVCFGSFLEDTYHLTNYQHYSIKPNNEHFGNIMKRAYGSTPSARSQRRISVDDYGAKANDGRHDTEAFEKAWNEACSTGGVLVVPEAKIYHLKPITFSGPCHPNTAFRVYGTIKAWPKISAYGKQRLLWIMFHNLTNLRVDGGGTINGNGRKWWDNSCKTNENLPCKHAPTAVTFFGCNNLRVTNLRFKNAQQMHIRFQKCNNVTASNLILRAPGNSPNTDGIHVTETKNIMISNSSIGTGDDCISIVSGSQNVRVIDVTCGPGHGISIGSLGAGNSEAQVSNVLVNRATITGTTNGVRIKTWQGGSGYAKNIKFENIAMRNVTNPIIVDQNYCDQDKPCKEKVSAVQLSNIVYQNIRGTSASEVAIKFECSKTFPCKGIHFQDVILTPHGHGGSKTIATCENVRYVNRGKFLPPCSN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00230 439 FunFam Polygalacturonase QRT2 55 438 - -
Phco10g00230 439 SUPERFAMILY Pectin lyase-like 65 438 IPR011050 -
Phco10g00230 439 PANTHER - 70 425 - -
Phco10g00230 439 Gene3D - 56 433 IPR012334 -
Phco10g00230 439 SMART pbh1 272 292 IPR006626 -
Phco10g00230 439 SMART pbh1 331 352 IPR006626 -
Phco10g00230 439 SMART pbh1 302 323 IPR006626 -
Phco10g00230 439 SMART pbh1 249 270 IPR006626 -
Phco10g00230 439 SMART pbh1 222 248 IPR006626 -
Phco10g00230 439 ProSitePatterns Polygalacturonase active site. 279 292 IPR000743 GO:0004650|GO:0005975
Phco10g00230 439 Pfam Glycosyl hydrolases family 28 103 426 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00230 Phco-Chr10 1973639 1977509 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00230 10 1973639 1977509 Phco10g00230 10 1973639 1977509 ECH
Phco9g00186 9 1220258 1222895 Phco10g00230 10 1973639 1977509 PCT
Phco9g02180 9 47232350 47233836 Phco10g00230 10 1973639 1977509 PCT