Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00225 ATGATGGAGTCAGAAGGAGAAGCTGGGGCAAAGCCAATGAATGCATTGGGTGGCCAAGTTTGCCAGATCTGTGGTGATAATATTGGGAACAATGTGGATGGCAGTTCGTTCATTGCTTGCGATGTTTGTGCTTTCCCTGTCTGCAGGCCGTGCTATGAATATGAAAGGAAGGATGGAAATCAGTCTTGCCCTCAGTGCAAGACCAGGTACAAGAGACACAAAGGTAGTCCTGCTATTCTTGGAGACCGGGAAGAGGATGGGGGTGCTGATGATGGTGCAAGTGACTTCAATTACAATTCAGAAAATCAGAACCAAAAACAGAAGATTGCAGAGCGCATGTTGGGCTGGCAAATGGCATATGGTAGAGGAGAGGAGGTTGGTGCTCCAAATTATGATAAGGAAGTTTCGCACAATCACATTCCTATGCTCTCCGGTGGACAGGAGGTTTCTGGAGAATTATCTGCGGCCTCTCCTGAGAGGCTATCAATGGCATCTCCTGGTGGCCGTGGGAAGCGTGTCCACAATCTTCAATATTCGTCTGACATTAATCAATCACCAAATATTAGAGTTGGGGATCCTGGATTGGGCAATGTGGCATGGAAAGAAAGAGTTGATGGCTGGAAAATGAAGCAGGATAAGAATGTTGCTCCAATGAGCACGGGCCAAGCTACATCTGAAAGAGGAGCTGGAGATATTGATGCTAGTACTGATGTGCTTGTGGATGATTCCTTGTTGAATGATGAGGCTCGGCAACCTCTCTCCAGGAAGGTTTCTATTCCATCATCTAGGATCAATCCATACCGTATGGTCATTGCTCTGCGGCTGGTTATCCTATGCATATTTCTGCATTATCGAATAACAAATCCTGTTCCCAATGCATACGCATTGTGGTTGATATCAGTCATATGTGAGATTTGGTTTGCTATATCTTGGATATTGGATCAATTCCCCAAATGGCTCCCTGTAAATCGTGAAACATATCTTGACAGACTTGCACTAAGATATGATCGAGAAGGGGAACCATCGCAGCTTGCAGCTGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAAGAGCCTCCACTTGTGACTGCTAACACTGTACTATCTATTCTTGCTGTTGACTACCCAGTGGATAAGGTGTCCTGTTATGTCTCTGATGATGGTGCTGCTATGTTGACATTTGAAGCACTGGCTGAGACTTCAGAATTTGCAAGGAAATGGGTTCCTTTCTGCAAGAAATATAACATTGAACCCCGGGCACCCGAGTGGTATTTTGCACTGAAGATTGACTATTTAAAAGATAAGGTTCAACCATCATTTGTCAAAGATCGAAGAGCAATGAAGAGAGAATATGAAGAATTTAAAATTCGTGTCAATGGACTTGTTGCAAAGGCACAAAAGGTTCCTGAAGAAGGATGGGTGATGCAAGATGGTACGCCATGGCCTGGAAACAACACGAGAGACCATCCAGGAATGATTCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGTAATGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAACGTCCAGGATTCCAACATCACAAGAAGGCTGGTGCCATGAATGCACTTGTTCGAGTGTCAGCGGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAATAGTAAAGCGTTGAGGGAAGCTATGTGCTTTATGATGGATCCGAACCTTGGAAAAAATGTTTGCTATGTCCAGTTCCCACAGAGGTTTGATGGTATTGATAGGAATGATCGGTATGCCAACCGTAATACTGTTTTCTTTGATATAAATTTGAGAGGTTTGGATGGCATTCAAGGCCCTGTTTATGTGGGTACTGGGTGTGTATTCAATAGAACAGCATTATATGGCTATGAGCCCCCTATTAAACCTAAGCACAAAAAGCCTGGGTTGCTTTCTTCAATCTGCGGTGGTAACCGGAAAAAGGGCTCAAAATCTAGCAAGAAAGGATCGGACAAGAAAAAATCTAGCAAGACTGTTGACCCAACTGTGCCCATCTTCAGTCTTGACGATATAGAAGAAGGGGTGGAAGGTGCTGGATTTGACGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTCTTTGTTGCCTCTACACTCATGGAAAATGGTGGCGTTCCTCAGTCTGCAACTCCAGAAACTCTTCTTAAGGAGGCAATTCATGTTATCAGTTGTGGTTATGAGGATAAAACAGAATGGGGAAGTGAGATAGGATGGATCTATGGTTCCGTCACAGAAGATATTCTTACTGGATTCAAGATGCATGCCCGTGGTTGGAGATCTATATACTGCATGCCCAAGCTCCCAGCATTTAAAGGTTCTGCTCCTATCAATCTTTCTGATCGTCTGAACCAAGTGCTTCGTTGGGCTTTAGGTTCAGTGGAAATTCTTCTGAGTCGACATTGCCCCATCTGGTACGGTTATAGTGGAAGGCTAAAGTGGCTCGAGAGGTTCGCATATGTGAACACCACAATCTATCCAATCACTTCCATTCCCCTTCTCATGTATTGTACCTTACCTGCGGTCTGTCTCCTGACTAACAAGTTCATTATTCCACAGATCAGTAACATTGCAAGTATATGGTTTATCTCTCTCTTTCTTTCCATCTTCGCGACTGGTATCCTTGAGATGAGGTGGAGTGGTGTTGGAATTGATGAGTGGTGGAGAAACGAACAATTTTGGGTTATCGGTGGTGTTTCAGCCCATCTTTTTGCCGTGTTCCAAGGTTTACTCAAAGTGCTTGCTGGAATTGACACTAACTTCACTGTTACCTCAAAGGCAACAGATGAGGATGGAGACTTTGCAGAACTCTACATGTTCAAATGGACAACCCTCCTCATCCCACCCACAACACTTCTCATCATAAACCTGGTTGGAGTTGTTGCAGGTATCTCCTATGCCATCAACAGTGGCTACCAATCATGGGGTCCCCTCTTTGGTAAGCTCTTCTTTGCATTTTGGGTGATCATCCATCTCTACCCCTTCCTCAAAGGTCTCATGGGACGCCAGAACAGAACACCAACCATTGTGGTGGTCTGGTCCATTCTTCTTGCATCCATTTTCTCTCTGTTGTGGGTCCGAATCGACCCTTTTACCACCAAAGTCACTGGTCCTGATGTTGAGCAGTGTGGAATCAACTGCTAG 3228 0.4427 MMESEGEAGAKPMNALGGQVCQICGDNIGNNVDGSSFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAILGDREEDGGADDGASDFNYNSENQNQKQKIAERMLGWQMAYGRGEEVGAPNYDKEVSHNHIPMLSGGQEVSGELSAASPERLSMASPGGRGKRVHNLQYSSDINQSPNIRVGDPGLGNVAWKERVDGWKMKQDKNVAPMSTGQATSERGAGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIALRLVILCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFCKKYNIEPRAPEWYFALKIDYLKDKVQPSFVKDRRAMKREYEEFKIRVNGLVAKAQKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGLLSSICGGNRKKGSKSSKKGSDKKKSSKTVDPTVPIFSLDDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLKWLERFAYVNTTIYPITSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKATDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTKVTGPDVEQCGINC 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00225 1075 ProSiteProfiles Zinc finger RING-type profile. 21 67 IPR001841 -
Phco10g00225 1075 FunFam Cellulose synthase 464 638 - -
Phco10g00225 1075 FunFam Cellulose synthase 4 95 - -
Phco10g00225 1075 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 468 638 IPR029044 -
Phco10g00225 1075 SUPERFAMILY RING/U-box 6 88 - -
Phco10g00225 1075 CDD mRING-HC-C4C4_CesA 19 69 - -
Phco10g00225 1075 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 250 1042 - -
Phco10g00225 1075 Pfam Cellulose synthase 347 1069 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco10g00225 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 96 IPR013083 -
Phco10g00225 1075 Pfam Zinc-binding RING-finger 11 86 IPR027934 -
Phco10g00225 1075 SUPERFAMILY Nucleotide-diphospho-sugar transferases 361 888 IPR029044 -
Phco10g00225 1075 MobiDBLite consensus disorder prediction 648 681 - -
Phco10g00225 1075 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00225 Phco-Chr10 1935402 1942373 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g02229 9 47639852 47645764 Phco10g00225 10 1935402 1942373 PCT