Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00223 ATGATTCTGATTCTGGATTTTATTCAGATCTATTCCATTGCTCAAGCTTTTCTGGAATATTCGCTTGGCTTTTTATTTGGTTTTACTTTATGGGTTGAGTACTATACTTTCCTGCGCCTGTTGTTTGAATTTCAAGTTTTGTTTTTGATGTCTAAGTTCATCTTCTCGAGAGCTAACCGAAGCATGTGCCGTGGTCCAGAGAAATCAAAATCTCTTTCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAAAGCCAAAGACATGAAAGATTTAACTGTTTGTGCTGAAGATTCTTTTTCCTGCCTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGTGATATTTCTCTAATAAACGAAGTTGGCCTCTGGTATGTCCGCCAGATTGGGTCCAAACAAATTGTTCTGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTCTGGATGTTCTAAAACTTATACTCTCGTGTCCGGAGGCTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTTCATTGTGCTGCATCAGGTGGTTCTGTTAATGCAGTTGACGTTGTGAAATTGCTCTTATCATCTGGTGCTGACATCAGATGTGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCGAAGGTCTGAAAGCAACGCTTGAAGATCTACTTTCAGATAGTGCGTGTGATGGGTCTGTTGGTGACTGTTTTATTCCAGTATCAGTTAATTCATCGTGTTCTGATTCAGCGACTCATTTTTTATCACTTGAAAATGGGTTGCCATCGTCTCCTATGGCTTCCAAGTTTACTGATACAGCTGTTAATTCTGCTTCCGAGAAGAAAGAATATCCAATTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTACGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGGGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCCCAATATCGGACAAGGCTGTGCAAGGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCTGCTGTTCCTTCACCCCGTTCAACTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCTTCACTTTCTGCCATGTCTCCATCTCCCTTCGCACAGCCAATGTCTCCATCTCCCTTCGCACAGCCAATGTCTCCATCTACAAGTGGCATCAGTCACTCATCTATTGCTTGGCCACAACCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGGAGACCTGGATGTGTTGCAAGATTTTAATGGTCAGCAACACCTTTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCTTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATCTATTTTCTCCTGAAATTTCTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCTTCTCCTAGGAATATTGAGCATCCACTTTTACAGGCTTCATTTGGTGTCTCTTCTCCGGGAAGAATGTCCCCAAGAAGTTTGGAACCAATATCTCCAATGAGTGCTCGATTATCTGCATTTTCACAGCGTGACAAGCAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTGGGGTCCCCAGTTAACTCCTGGTCGAATTGGGGTTCTCCTCATGGGAATGCAAAGGTAGATTGGTCCGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGGAGGAGCCTGATCTATCCTGGGTTCAGTCCCTTGTGAAGGAATCCCCATCGGAGTTAAAAGAGAAGTTGGCAGGTTCTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2379 0.4388 MILILDFIQIYSIAQAFLEYSLGFLFGFTLWVEYYTFLRLLFEFQVLFLMSKFIFSRANRSMCRGPEKSKSLSTPSSSAVEGSTKAKDMKDLTVCAEDSFSCLLELASNNDFEDFKLALDSDISLINEVGLWYVRQIGSKQIVLEHRTPLMVASMYGSLDVLKLILSCPEADVNFSCGTDRSTALHCAASGGSVNAVDVVKLLLSSGADIRCVDANGNRPVDVIVVPPKLEGLKATLEDLLSDSACDGSVGDCFIPVSVNSSCSDSATHFLSLENGLPSSPMASKFTDTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSTASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQPMSPSPFAQPMSPSTSGISHSSIAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPGDLDVLQDFNGQQHLLNDLSCFSQPRLGAISVSRSGRSKTLTPSNLDLFSPEISSSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNIEHPLLQASFGVSSPGRMSPRSLEPISPMSARLSAFSQRDKQQQLRSLSSRDLGAHNPVSIVGSPVNSWSNWGSPHGNAKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSELKEKLAGSGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00223 792 SUPERFAMILY Ankyrin repeat 91 225 IPR036770 -
Phco10g00223 792 ProSiteProfiles Ankyrin repeat profile. 180 215 IPR002110 GO:0005515
Phco10g00223 792 MobiDBLite consensus disorder prediction 658 678 - -
Phco10g00223 792 SMART ANK_2a 180 212 IPR002110 GO:0005515
Phco10g00223 792 SMART ANK_2a 145 175 IPR002110 GO:0005515
Phco10g00223 792 MobiDBLite consensus disorder prediction 66 83 - -
Phco10g00223 792 FunFam Zinc finger CCCH domain-containing protein 66 316 384 - -
Phco10g00223 792 SMART c3hfinal6 358 384 IPR000571 GO:0046872
Phco10g00223 792 SMART c3hfinal6 393 416 IPR000571 GO:0046872
Phco10g00223 792 MobiDBLite consensus disorder prediction 658 681 - -
Phco10g00223 792 ProSiteProfiles Ankyrin repeat region circular profile. 180 214 - -
Phco10g00223 792 Pfam CCCH-type zinc finger 363 383 IPR041367 -
Phco10g00223 792 PANTHER UNKEMPT FAMILY MEMBER 105 744 IPR045234 -
Phco10g00223 792 MobiDBLite consensus disorder prediction 462 492 - -
Phco10g00223 792 MobiDBLite consensus disorder prediction 64 84 - -
Phco10g00223 792 ProSiteProfiles Zinc finger C3H1-type profile. 363 385 IPR000571 GO:0046872
Phco10g00223 792 Gene3D - 86 239 IPR036770 -
Phco10g00223 792 Pfam Ankyrin repeats (3 copies) 130 212 IPR002110 GO:0005515
Phco10g00223 792 Gene3D - 359 421 - -
Phco10g00223 792 MobiDBLite consensus disorder prediction 478 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00223 Phco-Chr10 1914650 1917761 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco10g00223 Ank_2 2.5e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00223 10 1914650 1917761 Phco9g02232 9 47661452 47663566 ECH
Phco10g00223 10 1914650 1917761 Phco10g00223 10 1914650 1917761 ECH
Phco9g02232 9 47661452 47663566 Phco10g00223 10 1914650 1917761 PCT