Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00222 ATGGACGAGAATGGTAGCTCAAGTAATGAACCCAAGAACAAGAGAAACCTGCCTGTCTCAGTTTTCTTCAAAGATGCAAGACGTGTTTTCAAGATGGACTCCATTGGCAAGGAGATACTTGGGATTGCATTCCCATCTGCACTGGCTGTTGCTGCTGATCCTATTGCTTCTCTTATAGACACAGCATTCATAGGCCACTTGGGGCCAGTAGAGCTTGCAGCAGCAGGAGTGTCCATAGCTTTGTTCAACCAAGCTTCAAGAATTACCATCTTCCCTTTGGTTAGCATCACAACTTCCTTTGTGGCTGAGGAAAATACCATCGAAAAAATCAATAAAGAAAAGAATTTGACTGAAAACATTAAGGCCAAGTCCAAAGAAGTAAGGCCCGAGGATCATCTGATTCAAGATATAGAGAAAGGAGCATCCAAGGAACACAATGAAACTCCAACAGAATCTTCATCTTCAAGAAGTGGCACAAGCGAGCTCGTGGCAAAAGGTTGTGCCCCAGAGAATGTGGAAATGGATGATTGCAATACAAGTATAAGCAAATCTACCTCTGCTAGTAGTAGTAACAAGAGTATGTCAAAAGCTGGAAGGAAGAAGAGACACGTTGCTTCTGCATCAACGGCACTACTTTTTGGCACAATTCTTGGTCTCCTTCAAGCAGCAACCCTTATATTTGCAGCCAAACCTCTATTAGCTGCAATGGGTCTGAAACCTGATTCTCCTATGCTAAATCCAGCTGTTAAATACTTGAGATTGAGATCTTTAGGTGCCCCTGCAGTGCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGATTCAAGGACACTACAACTCCTTTATATGTTATTGTTTCGGGGTATGCATTGAATGTGGCTTTGGATCCAATTCTTATCTTCTACTGCAAAATGGGCATCAAAGGTGCTGCCATTTCACATGTTCTCTCTCAGTATGTGATGGCAGTGGCCCTCTTGTTGATATTAACTAGAAAAGTGGATCTCGTACCTCCAAGTATTAAGGACTTGCAGATTTTCAGGTTTCTTAAAAATGGAGGTCTTTTGTTGGCAAGAGTTGTAGCTGTGACATTCTGCCAAACCTTGGCAGCCTCATTGGCAGCAAGGTTTGGCCCAATTCCTATGGCTGCTTTCCAAACCTGCTTGCAGGTGTGGCTGACATCTTCTCTTCTTGCTGATGGTTTAGCTGTTGCTGTACAGGCAATTCTAGCTTGTTCCTTTGCTGAAAAAGATTATGAAAAGGTGATTGCTACTGCAACACGAACACTACAGATGAGTTTTGTTTTAGGAGTTGGACTCTCTTTTGCAGTTGGAGTTGGCTTATACTTTGGAGCTGGAATCTTCTCCAAAAGTGTACTTGTTGTGCACTTAATCAGAATAGGCCTCCCGTTTGTTGCTGCAACACAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTGAACTATGGGGCTTCTGATTTTGCATATTCTGCATACTCCTTGGTCACTGTGTCATTAGCAAGTGTTGCTTCACTGTTCGTTCTCTCTAAGAGCAAAGGTTTTGTTGGACTATGGATTGCACTAACCATCTATATGAGTCTTCGTATGTTTGCTGGTGTATGGAGGATGGGAACAGGAACAGGACCATGGCGTTTTCTGAGAGGACGTTGA 1671 0.4303 MDENGSSSNEPKNKRNLPVSVFFKDARRVFKMDSIGKEILGIAFPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEENTIEKINKEKNLTENIKAKSKEVRPEDHLIQDIEKGASKEHNETPTESSSSRSGTSELVAKGCAPENVEMDDCNTSISKSTSASSSNKSMSKAGRKKRHVASASTALLFGTILGLLQAATLIFAAKPLLAAMGLKPDSPMLNPAVKYLRLRSLGAPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYALNVALDPILIFYCKMGIKGAAISHVLSQYVMAVALLLILTRKVDLVPPSIKDLQIFRFLKNGGLLLARVVAVTFCQTLAASLAARFGPIPMAAFQTCLQVWLTSSLLADGLAVAVQAILACSFAEKDYEKVIATATRTLQMSFVLGVGLSFAVGVGLYFGAGIFSKSVLVVHLIRIGLPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLVTVSLASVASLFVLSKSKGFVGLWIALTIYMSLRMFAGVWRMGTGTGPWRFLRGR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00222 556 CDD MATE_DinF_like 37 545 IPR044644 -
Phco10g00222 556 MobiDBLite consensus disorder prediction 175 194 - -
Phco10g00222 556 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 5 554 IPR044644 -
Phco10g00222 556 MobiDBLite consensus disorder prediction 137 200 - -
Phco10g00222 556 NCBIfam MATE family efflux transporter 45 525 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco10g00222 556 Pfam MatE 359 506 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco10g00222 556 Pfam MatE 197 298 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00222 Phco-Chr10 1901171 1905291 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00222 10 1901171 1905291 Phco9g02233 9 47669188 47675057 ECH
Phco10g00222 10 1901171 1905291 Phco10g00222 10 1901171 1905291 ECH
Phco9g02233 9 47669188 47675057 Phco10g00222 10 1901171 1905291 PCT