Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g00122 ATGGATATAGATCTCCGGTTACCTTCTGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACTTGTTGGACAGTGAAGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATAGTTGAAGCCGGTATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTCATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCACGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCTATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAATTTGCTTGCTCCAGATATGGAACAAAACGAGAGTATGATAAATCATTTAATCGACCACGTGCTCGACAGAACAAACAAGATTCTGAAAATTCAACTGGTAGAAGATCTTGCTCTAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGCTTCGTGAAAGAGCATAATCATGAGCTTTTACCGGCTCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGGAATTTGGGCCTGGAGTCAGGGGAGGCTAAACTCATGCTTGATTTTTTCATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAGAAATCTTTTATGGATTGATGCTAAAAGTAGGAATGACTATATCAACTTTTGTGATGTAGTGTCATTTGATACCACATATGTTAGAAACAAATATAAAATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTACCAATTTACACTACTTGGATGTGCCTTGATATCAGATGAAAGTACTGCCACTTTTTCTTGGCTATTTCGGACATGGCTGAAAGGAGTTGGTGGTCAAGTTCCAAAAGTGATCATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGACATCTTTCCTAATTCTAGTCATTGTGTTTGCTTATGGCATGTATTAGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAGCATGAGAATTTTATGGCAAAATTTGAAAAATGCATTTATAGGTCCCTGACCAGTGATGATTTTGAGAAGAGATGGTGGAAAATTGTTGATAAGTGTGAACTTCGAGAGGATGAATGCATGCAGTCTTTGTATGAAGATCGAAAGTTATGGGCACCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACTGTCCAGCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTGCATAAGAAGACCTCTGTCCAAGATTTTGTCAAACAGTATGAATCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAATTGGCTACCTTAAAAACTCCTTCACCTTTGGAGAAGAGTGTTGCAGGGATTTTCACGCATGCTGTATTCAAGAAAATTCAAGCTGAGGTTGTAGGTGCAGTTGCCTGTCATCCTAAAGCTGACAGGCAGGATGATACAACCACTGTTCACAGGGTTCATGACATGGAAACAAATAAAGACTTCTTTGTTGTGGTGAATCAAGTGAAGTTCGAGTTGTCTTGTATATGTAGGTTATTTGAATACAGAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAATATTCTGGACAGTCAGTGTTCCCGTCTCAGTATATTTTAAAGCGGTGGACAAAAGATGCAAAGCTTAGGAATATAATTGGAGAGGAATCTGAACACATGCTGAGTAGGGTGCAACGGTACAATGATTTATGTCAGCGAGCACTAAAGCTTAGTGAAGAGGGATCATTGTCTCAAGAGAGTTATAGTATTGCATTCCATGCACTACATGACGCACACAAAAGTTGTGTGAGTGTTAACAATTCTAGTAAAAGTCCTACAGAAGCTGGTACATCAGGAGCTCATGGTCAGCTTTCCACTGAAGAAGATACACAAAGTAGAAATATGAGCAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCGGAAGTGATGACAGTTGGGGCACTAGACAACTTACAACAAATGGAAAAATTCAGCACAAGAGCTGCAGTAACCCTTGAAGGTTATTATGGCACACAGCAGAGCGTGCAAGGAATGTTGAACTTAATGGGACCAACTCGTGATGATTACTATGGGAATCAACAGACTCTTCAGGGGCTGGGGCCAATAAGTTCGATACCAACCAGTCACGATGGTTATTATGGTGCACATCAGGGTATTCCTGGTCTGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATGGCATTCGGGATGATCCCAACGTGAGAGCAACACAGTTGCATGAGGATCCATCAAGACATGCATGA 2532 0.3898 MDIDLRLPSGEHDKEDEETTTIDNLLDSEEKLHNGGIDGRNIVEAGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLRNLLWIDAKSRNDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESTATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSSHCVCLWHVLGKVSENLAPVIKKHENFMAKFEKCIYRSLTSDDFEKRWWKIVDKCELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYESILQDRYEEEAKADSDTWNKLATLKTPSPLEKSVAGIFTHAVFKKIQAEVVGAVACHPKADRQDDTTTVHRVHDMETNKDFFVVVNQVKFELSCICRLFEYRGYLCRHALIVLQYSGQSVFPSQYILKRWTKDAKLRNIIGEESEHMLSRVQRYNDLCQRALKLSEEGSLSQESYSIAFHALHDAHKSCVSVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNMSKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSTRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGAHQGIPGLAQLDFLRTGFTYGIRDDPNVRATQLHEDPSRHA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g00122 843 MobiDBLite consensus disorder prediction 1 20 - -
Phco10g00122 843 MobiDBLite consensus disorder prediction 132 164 - -
Phco10g00122 843 Pfam MULE transposase domain 288 380 IPR018289 -
Phco10g00122 843 MobiDBLite consensus disorder prediction 677 726 - -
Phco10g00122 843 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Phco10g00122 843 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Phco10g00122 843 SMART 26again6 579 606 IPR006564 GO:0008270
Phco10g00122 843 MobiDBLite consensus disorder prediction 677 706 - -
Phco10g00122 843 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
Phco10g00122 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 677 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g00122 Phco-Chr10 985412 988575 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco10g00122 FAR1 2.3e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g00122 10 985412 988575 Phco9g02037 9 45372721 45377893 PCT