Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02074 ATGACAAATCAACATCCCACTTTGCATTGTAGTTTCCTTTTGTTTCTCTTGTACCTTCTACTCAATGCAGCTCCTACGAGTTGCAAGTTCACTATTGAGCCATGTTCTGACAATAACTCGTGCAATGCGCTTCTTGGCTACACCCTTTACACTGATCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTGGACTTCTCACTGCCAATGCCATTGACATCTCGTACTCTGATGTAGAGCATCGCATTCTCCCTTCCAAACTCTTCCTCAAGGTCCCTATCACATGTTCCTGTGCTGATGGGATTAGAAAATCAGCGTCTGCCCATTACAGGACTCGTCCTTCTGATACTCTCTCTTCCATTGCAGATTCAGTGTATGGAGGTCTGGTATCCCCTGATCAGCTTAGGGAGGCTAATTCCATAGCTGACCCTTCGGTGCTTGATGTGGGTCAGAACCTTGTGGTGCCACTTCCATGCACTTGCTTCAATGGCAGTGATAATTCTTTGCCTTCAATTTACCTCTCCTATGTGGTAAAGCCAATTGATACGTTGGCTGCCATTGCAGCTAGATATTTCACTACACTTACTGATTTGATGAATGTTAATGACATGGGGAGTGCAGCTATCTCTGATGGAGATATTCTTGCTGTTCCAATTCCTGCTTGTGCATCAAATTTTCCAAAATATGCCACTGATTTTGGCATGCTTGTCCCTAATGGAAGCTATACCATTGCAGCTAGTCACTGTGTGCAGTGTAGCTGTGGACCACAAAATTTAGATTTATACTGTATTCCCTCTTCTCTAGCTGTCTCTTGCTCCAGCATGCAATGCAAAAGAAGCAATCTTATACTTGGGAATGTTACCGTGCAACATATGAGCTCAGGATGCAATGTGACATCGTGCAATTATGATGGTTTTGTCAATGGCAACATATTAACAATGATGTCCTCATCTCTTGAGCCTCATTGTCCAGGCCCGCAACGATTCCCTCCACTTATAGCGCCACCTACATCTGTTACAAGGGAATCAGTAGTTGCATTTCCTCCATCTCTATCACCATCACAGACACCATTACTGTCACAGTCACCATCATCGCAATCAGAAGGAACAGGTCTAACAGCACCCAAATCTTCAGTCATGCCTGCAGCCAGATCATTTCCAGGATTCTCACCTGCAAATGGCCCTGTTGGTAGGATTGCTTCTGCTTCTCCCTCTTTGGTGAATCCTATTCCCATTTGGATACCCTCATTTATATTGTTGCTTATAAAGTTGATGATCCCTGTGGCTTTTTAA 1302 0.4401 MTNQHPTLHCSFLLFLLYLLLNAAPTSCKFTIEPCSDNNSCNALLGYTLYTDLKVSEVASLFQIDPIGLLTANAIDISYSDVEHRILPSKLFLKVPITCSCADGIRKSASAHYRTRPSDTLSSIADSVYGGLVSPDQLREANSIADPSVLDVGQNLVVPLPCTCFNGSDNSLPSIYLSYVVKPIDTLAAIAARYFTTLTDLMNVNDMGSAAISDGDILAVPIPACASNFPKYATDFGMLVPNGSYTIAASHCVQCSCGPQNLDLYCIPSSLAVSCSSMQCKRSNLILGNVTVQHMSSGCNVTSCNYDGFVNGNILTMMSSSLEPHCPGPQRFPPLIAPPTSVTRESVVAFPPSLSPSQTPLLSQSPSSQSEGTGLTAPKSSVMPAARSFPGFSPANGPVGRIASASPSLVNPIPIWIPSFILLLIKLMIPVAF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02074 433 Gene3D LysM domain 168 229 IPR036779 -
Phac8g02074 433 SUPERFAMILY LysM domain 177 222 IPR036779 -
Phac8g02074 433 CDD LysM 178 220 IPR018392 -
Phac8g02074 433 Gene3D LysM domain 107 167 IPR036779 -
Phac8g02074 433 SUPERFAMILY LysM domain 112 160 IPR036779 -
Phac8g02074 433 CDD LysM 112 158 IPR018392 -
Phac8g02074 433 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Phac8g02074 433 MobiDBLite consensus disorder prediction 353 377 - -
Phac8g02074 433 Pfam LysM domain 113 159 IPR018392 -
Phac8g02074 433 Pfam LysM domain 179 221 IPR018392 -
Phac8g02074 433 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Phac8g02074 433 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 330 - -
Phac8g02074 433 SMART LysM_2 178 221 IPR018392 -
Phac8g02074 433 SMART LysM_2 112 159 IPR018392 -
Phac8g02074 433 MobiDBLite consensus disorder prediction 353 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02074 Phac-Chr8 27584917 27587874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02074 12 427 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 62.201 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02074 - - pvu:PHAVU_008G163700g 807.364