Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04477 ATGGTGCCACCAGAAGGCATGCCGCCACCAACACCCAAAGACCATGAGGTCACTGAGGGCCGCAAAACGACCAGGCCAGCACCCGAACAAGGTGTCAAGTGCCCCAGATGTGACTCACCCAACACCAAGTTCTGCTACTACAACAACTACAGCCTAACTCAGCCCAGGCACTTCTGCAAGACGTGCAGGAGGTACTGGACCAACGGTGGTGCCTTGCGCAACGTCCCAATAGGAGGTGGTTGCCGGAAGAACAAAAAGGTGAAACCTTCTTCTTCCTCTTCTTCGTCCTCCTCCAAAGACTTCAATTTTCATGGTCTCACAGTTCCACCTTCCGTTGACTTTAACCTCGGAGGGTTGCCCTTTCCCTCCAGGCTCACTGCTTTCAACACTCAACAACACCTCCCAACACCCCCCTTCAACCAGTTCTCTTCTTTTGGGGACGTTGCATCATCTTCAACCACTTCTCTTTCTGCTTTCTCTGCCTTCCAAGACCCCCCTGCTGCTGTTTCGAACCCTCTCTTGGGTCTTGTTCCGCCCAGCCCTGACCTCTGGGCACCACGTAGGTCCGAAAGGGCCTCACTGTCTGATCCACTGAACAGTGCAATGCAAACCCTGCAGACCATGGAAGCCATGAACGTTCACAGCAGCCTGGCCTCTTCAATTGAGTCGCTGAGCAACATCAACCAGGATTTGCACCTGAAGCTGCAGCAGCAGCGCATGGCGACAATGATGTTCGGTGGGGACAGCCAGAAAGGCGAGAGCAGCGTTGCGCTGAATGGTTTTGGGAATCAGAAGGTTTCGTCTCAGAGCCTTGCGATTTCGAAGCCAGAGAACTTGCCAGCTGTCAGTTCCATAAATGGAGGCCCAAGTGGGGAGACAGTTACTGCAGCATCCACCGAATGGTTCTTTGGGAATTCCTTTCCCTCAGTGTCTCCTTCAACAAGCAATGGTGCTGCCAATGTTAACCACATTAGCAACGATCCAAACAACAACTGGTCTGGTGCCCTTGCCTGGGGAGATTTGCAGCACCAACCATACACCGCTTTGCCCTAG 1053 0.5328 MVPPEGMPPPTPKDHEVTEGRKTTRPAPEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKPSSSSSSSSSKDFNFHGLTVPPSVDFNLGGLPFPSRLTAFNTQQHLPTPPFNQFSSFGDVASSSTTSLSAFSAFQDPPAAVSNPLLGLVPPSPDLWAPRRSERASLSDPLNSAMQTLQTMEAMNVHSSLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGESSVALNGFGNQKVSSQSLAISKPENLPAVSSINGGPSGETVTAASTEWFFGNSFPSVSPSTSNGAANVNHISNDPNNNWSGALAWGDLQHQPYTALP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04477 350 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Phac3g04477 350 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Phac3g04477 350 MobiDBLite consensus disorder prediction 1 33 - -
Phac3g04477 350 MobiDBLite consensus disorder prediction 77 102 - -
Phac3g04477 350 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Phac3g04477 350 MobiDBLite consensus disorder prediction 86 102 - -
Phac3g04477 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 240 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04477 Phac-Chr3 42857762 42859470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04477 8 350 C2C2-Dof Transcription Factor Family AT5G65590 36.508 6.98e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phac3g04477 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04477 - - gmx:102663483 384.8