Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03889 ATGATCCAAGAACTGTTGGGTGGAGCTGGCCTCTTAGCAGGAGAAAGAAAACCCTCCATTAATGGTGGGGGAGGTGGAGGAGTTCTACTCCCAACTACACCATCTTCCTCTTCTCTTCCTTCTACCGCAACTAATAATGTTACCCTCACATCCACCACCACAACTACCACTACTGCCACCACCACCACCACTCCCACGTCCGAAAACCAAAACCTGAGGTGCCCGCGATGCGATTCCTCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCGCGCCACTTCTGCAAGACGTGCCGTCGCTACTGGACTAAAGGTGGCGCTCTCCGAAACGTTCCCATCGGCGGCGGCTGCCGGAAAAACAAGAACATCGGCGTGGCGAACTCGGTGGCAAAGACAGCCTCAACCAAGATGAAAGCCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTCGGTGGGTTTGAAGTTGAACACGAGCTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACTCACCTTCTGGCTCTGCTGAGAGCTACTCAAAACCAAAACCCTAACCCTAACCCTACTCCCATGTCCATCAAGGAAGAAGGGACCCTGATGGGCCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGTTGCTGAATCACCGAACCTTAGGCTATGATGCGGTTGCGCAAGTTCCATCGCTTGGTCTGTTTGGGAGAAGCCATCAAGATCAACAACAAAATGGGGGGTTCCTACTCGGGGAACACCACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCATCATCGGCTAATAATTATTGCAGTGATAACTCCTCACAAATGTTTATGGGGAACATGGCTTCTAATTATTCCTCTTCTGTGTCCAACAACATTATGGAGACAACTTCGGTTGCTGGGGGTGAATTCGGATACTGGAACGGTCCAACCTTTTCCTGGTCTGATCTTCCAACAACGAATGGCGCTGGTGCATATCCGTGA 1017 0.5074 MIQELLGGAGLLAGERKPSINGGGGGGVLLPTTPSSSSLPSTATNNVTLTSTTTTTTTATTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKAVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNQNPNPNPTPMSIKEEGTLMGHMVSTEPLVSNALLNHRTLGYDAVAQVPSLGLFGRSHQDQQQNGGFLLGEHHNSGIQELYQKLRSSSANNYCSDNSSQMFMGNMASNYSSSVSNNIMETTSVAGGEFGYWNGPTFSWSDLPTTNGAGAYP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03889 338 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Phac3g03889 338 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Phac3g03889 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 61 277 IPR045174 GO:0003700|GO:0006355
Phac3g03889 338 Pfam Dof domain, zinc finger 70 126 IPR003851 GO:0003677|GO:0006355
Phac3g03889 338 MobiDBLite consensus disorder prediction 13 71 - -
Phac3g03889 338 MobiDBLite consensus disorder prediction 30 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03889 Phac-Chr3 38642235 38644102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03889 41 157 C2C2-Dof Transcription Factor Family AT5G60200 53.333 5.29e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phac3g03889 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03889 - - gmx:778108 509.605