Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01462 ATGGCCGGCGAACTCGCCGGAGACCACACGCCAGAGCTCCTCTGTCTGGTCCATGACATCGCCGGAATGTGCCCCGGCTCCTCCTCCGCCACGCCCATTGCCGCCGACGCCCTGTTCCGCAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACCCACTTGTTCGAGGAGATTAGAGAACTCAACAACAACAAGAACAGCAACAATGTTGTCCCTTCCGCTTCCTCCTCTTCTTCCTCCTCTTCCGCGGCATCTTGGTCATCTGATCTTGTCCTCGCTCTTCACTCTGCAAGAAGCTTGCTTTCCGTCGCCAGAAATTTCCGGTCCAATTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGTAATTTGTCGTATGACAATTTGGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACGCAATTGAAACGAGCCACAGAAAAATATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCACTGACTGAAGAAATTAGTCAGGTTCTTGCCAAATCCGTGGGTGGATTGTACAAACAACATAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTTCTAAGAACAATGGAGAGAATAATAGCAGCACTAATCGGGCTGGATCTCGCTTGGAAAGAGCAAGGAGCATCCATGCTTCTTCTGAAGTTTTCTTTTTGAATGAATCTGATCCTGAAAGTCAAGAAATTTCTGACACAAAGAGTCTCCCTGAGGTTAAAAAGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCGACTGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACCCTCACACCAAATTATGTTTTAAGGAGCCTTATTTATCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACCAATGGGAAAATAAAGAAGAGTGATGGGTCGTTCAGAGACGTTACAGGTGACATAGCAGCAATTGAAGCTCTGGTGCGGAAGCTCTCCAGTCGGTCTGTTGAGGAGCGTAGAGCAGCTGTCACCGAAATTCGATCACTATCCAAACGTAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTACTGACGCAAGACAATGCTGTTACATCAATTCTAAACCTTTCCATTTATGAAAATAACAAAGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGTGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAAATCATAATTGGTGCGTCAGGAGCCATACCCGCTTTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCCGCAACAGCATTATTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTCGGGCAGGGATCATCACAGCATTGTTGAAAATGCTTACTGATTCAAGCAAATTAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAATTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTACCTCGCAATAAAGAGAATGCAGCTGCTATTCTTCTTGCCTTGTGCAAGAGGGATGCCGATAATCTTGCTTGTATAAGTAGACTTGGTGCCGTCATACCTCTTTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTACTGGAGCATCTTCGTAAGTTGCAGCAACTTTGA 1968 0.4512 MAGELAGDHTPELLCLVHDIAGMCPGSSSATPIAADALFRKDCTDLVRRISLLTHLFEEIRELNNNKNSNNVVPSASSSSSSSSAASWSSDLVLALHSARSLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLSYDNLDISEEVKEQVDLVRTQLKRATEKYGFMISKMPSHELSQPLTEEISQVLAKSVGGLYKQHSCPENLSELDSISKNNGENNSSTNRAGSRLERARSIHASSEVFFLNESDPESQEISDTKSLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLIYQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKLMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01462 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Phac2g01462 655 FunFam RING-type E3 ubiquitin transferase 275 350 - -
Phac2g01462 655 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Phac2g01462 655 Pfam U-box domain 276 347 IPR003613 GO:0004842|GO:0016567
Phac2g01462 655 SMART arm_5 487 527 IPR000225 GO:0005515
Phac2g01462 655 SMART arm_5 446 486 IPR000225 GO:0005515
Phac2g01462 655 SMART arm_5 569 609 IPR000225 GO:0005515
Phac2g01462 655 SMART arm_5 405 445 IPR000225 GO:0005515
Phac2g01462 655 SMART arm_5 528 568 IPR000225 GO:0005515
Phac2g01462 655 MobiDBLite consensus disorder prediction 212 235 - -
Phac2g01462 655 Gene3D - 358 454 IPR011989 -
Phac2g01462 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 416 IPR000225 GO:0005515
Phac2g01462 655 Coils Coil 148 168 - -
Phac2g01462 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Phac2g01462 655 FunFam RING-type E3 ubiquitin transferase 555 654 - -
Phac2g01462 655 SUPERFAMILY ARM repeat 375 649 IPR016024 -
Phac2g01462 655 SUPERFAMILY RING/U-box 275 350 - -
Phac2g01462 655 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Phac2g01462 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
Phac2g01462 655 MobiDBLite consensus disorder prediction 212 233 - -
Phac2g01462 655 FunFam RING-type E3 ubiquitin transferase 354 554 - -
Phac2g01462 655 Coils Coil 635 655 - -
Phac2g01462 655 Gene3D - 455 553 IPR011989 -
Phac2g01462 655 Gene3D - 554 654 IPR011989 -
Phac2g01462 655 Pfam Armadillo/beta-catenin-like repeat 406 444 IPR000225 GO:0005515
Phac2g01462 655 Pfam Armadillo/beta-catenin-like repeat 488 526 IPR000225 GO:0005515
Phac2g01462 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 498 540 IPR000225 GO:0005515
Phac2g01462 655 PANTHER U BOX DOMAIN-CONTAINING 40 651 - -
Phac2g01462 655 CDD RING-Ubox_PUB 277 329 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01462 Phac-Chr2 12984370 12988089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01462 37 654 U-box Gene Family AT1G23030 62.581 0.0 732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g01462 2 12984370 12988089 Phac2g01462 2 12984370 12988089 ECH