Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00248 ATGCAAGTTCTACATTTTCCAATGCATAAACACCAAGCGTTTTCTTCAGGGCCCTATGCAGATATATTATCTGGGAATCCTCTTTTACCTCATAACTACAGTGAAACTGTTGGAGAACACAATGAGTTGAAGTTCATCTCATCCATGAGGAACACAATGACTGTGCAACCTATTGATGAGCATTCAAATGCGGCCCCCACAGCTGATCAAAACTCTTTTACCAATGCTGGAGATTCCCATTCCCATCTTGTTCCTAGAACAACACAATTAGGACTTGTGAACAGTGAGCAAAATGTACAGAACCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGTGCCGGTTTCTCTTCACTAATGAATGCTTCTGTCCAAAATTTAAGGGGCACTTCATCTCTTAAAGATGATGAAGCCAGTCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTGTGGCTTTCACAAAAGGGAAGGCGTGTTGTATACTCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTGGGCTTTTCCAGCAATGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGCTGCTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGCCAATCAGGACAGATATCTTCATGTCCCAATAGTTCTGCAGCAAACTCCTCATGTGAGCTCTCACCTGCAGAGCGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGACCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATAGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCATCTGAACCATACACTGCACTTGCCTTGCGCACAATATCGCGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAGATCTATAAAGAAGAATTTGGCGTTTCTGAGATGAGCAGCAATCTATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTCCAATCTTCTGACAGTAAAAGGGAAGAGTCGCTGGACAACTTAGTAAAAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGGACAGAGGGATCCAAAGTGGTGATCATGGAGAAAATGCCATGGATCCTACAATTGGGAAACTGCAGGGTGACCAAAGGTTCAACATTAACAACAACAATAGTCCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTCCTGCTACATATGATTTATCAGAGTTAGGTAACATTGGTGTGGGTGGACAGGTGTCACTAGCACTGGAATTGAGGAACTATGAAAGTGAAGGATTTGGTGTGTCCAATGATGAGATGCATAGAAGACGCAAGAAAACAATGGCTTCTTCTTCCCCAGAGGCTGATTTGCTAGACTACCATTTCACAGACCAAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAGTTTGTTGTGTGA 1938 0.4355 MQVLHFPMHKHQAFSSGPYADILSGNPLLPHNYSETVGEHNELKFISSMRNTMTVQPIDEHSNAAPTADQNSFTNAGDSHSHLVPRTTQLGLVNSEQNVQNQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMNASVQNLRGTSSLKDDEASLQRELRNAECMASLASCGFHKREGVLYTPQHPSMCLSEGQSDGSLGFSSNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLTMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGASEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGVSEMSSNLLSSENTLKAPRDDVQSSDSKREESLDNLVKVDDSVIQHHGLKLDHASELDRGIQSGDHGENAMDPTIGKLQGDQRFNINNNNSPYYGEGCIIAPTPATYDLSELGNIGVGGQVSLALELRNYESEGFGVSNDEMHRRRKKTMASSSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00248 645 Gene3D - 386 463 - -
Phac1g00248 645 Coils Coil 210 230 - -
Phac1g00248 645 MobiDBLite consensus disorder prediction 238 274 - -
Phac1g00248 645 SMART prehox3 198 348 IPR006563 -
Phac1g00248 645 MobiDBLite consensus disorder prediction 62 81 - -
Phac1g00248 645 Pfam Homeobox KN domain 406 445 IPR008422 GO:0003677|GO:0006355
Phac1g00248 645 SUPERFAMILY Homeodomain-like 390 456 IPR009057 -
Phac1g00248 645 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 478 - -
Phac1g00248 645 Pfam Associated with HOX 204 347 IPR006563 -
Phac1g00248 645 MobiDBLite consensus disorder prediction 248 274 - -
Phac1g00248 645 CDD homeodomain 389 450 IPR001356 GO:0003677
Phac1g00248 645 SMART HOX_1 389 453 IPR001356 GO:0003677
Phac1g00248 645 ProSiteProfiles 'Homeobox' domain profile. 386 449 IPR001356 GO:0003677
Phac1g00248 645 MobiDBLite consensus disorder prediction 472 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00248 Phac-Chr1 1595090 1612544 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phac1g00248 POX 2.6e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g00248 1 1595090 1612544 Phac1g00248 1 1595090 1612544 ECH
Phac9g01770 9 14317135 14325859 Phac1g00248 1 1595090 1612544 PCT