Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00213 ATGCCATTCAGGAGCATACTGCGTGAGCTCAAGGAGATTGGAGAGGGTATCAGCAACATGTATAGAAGAGGGGGAGAGGGAAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCCTACCATCCTCGTCCTCCTTCTCCTCATCATCATCTTCTTCTTCTTCTTCATCACAGAGTCGGTGGGCTAACTTACCACCAGAGTTGCTTTTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACCTCCTGGCCTTCACGTAGAGCACTTGTGGCATGTTCCTCAGTTTGTAGGCTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTTGCTCACTTTTCCCATATCACTGAAGCAGCCTGGCCCAAGAGACTCACCAATCCAGTGTTTTATCAGGAGAGAAAGAGTGTCTTCAACATATTGTTTATACCTCGGCCTAAGCCCTGCACTTTCTGGTGATATGAGCAAACTGTTACTGGCAGCAAAGAAGATTCGAAGGGCAACATGTACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTCGTACTAGCAATACTTACATTGGAAAGTTGAGGTCTAATTTTCTTGGCACCAAGTTCACAATCCTGGATGGCGAGTCCCCACATGATTCTTCACTTCCATTGAACTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCAAAGGTTGCTGCTGCTAATTACAAAGTGGCAACAGTATCTTATGAACTCAATGTCCTCCGAACAAGAGGTCCAAGGAGAATGCGGTGCACGATGCACTTGATACCCATATCTTCAATCCAAGAAGGAGGGAGTGCCCCAACTCCTTTGAAGTTTACAAATTATCTTAATGAGCATGTATCTACCACCACCACCTCAGACTCAAAAGGAAGGAAGCCAGAAGTTGTTGAGTTTGACACAACTGACACTGAAAATACTCAAGAATCAAGCCAGAGGGCAAGGGAACCATTGGTTTTGAAAAACAAGGCCCCTAGATGGCATGAACAACTGCAATGCTGGTGTTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTCGTGGCAGCTGCTGAACCATGCCAAAATGTTTCAGCTGCTGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTACCGATACCCCCTCTCAGCTTTTCAAGCCTTTGCAATATGTTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1287 0.446 MPFRSILRELKEIGEGISNMYRRGGEGKHVHRHGKSHIAPECSLPSSSSFSSSSSSSSSSSQSRWANLPPELLLDIIQRLEASETSWPSRRALVACSSVCRLWREITKDVVKTPEQCGLLTFPISLKQPGPRDSPIQCFIRRERVSSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRTSNTYIGKLRSNFLGTKFTILDGESPHDSSLPLNCKLQQRVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISSIQEGGSAPTPLKFTNYLNEHVSTTTTSDSKGRKPEVVEFDTTDTENTQESSQRAREPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00213 428 MobiDBLite consensus disorder prediction 24 47 - -
Phac1g00213 428 PANTHER TUBBY-RELATED 37 426 - -
Phac1g00213 428 MobiDBLite consensus disorder prediction 319 333 - -
Phac1g00213 428 Gene3D - 58 111 - -
Phac1g00213 428 Gene3D Tubby Protein; Chain A 124 428 IPR025659 -
Phac1g00213 428 MobiDBLite consensus disorder prediction 300 334 - -
Phac1g00213 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Phac1g00213 428 PRINTS Tubby superfamily signature 356 372 IPR000007 -
Phac1g00213 428 PRINTS Tubby superfamily signature 197 221 IPR000007 -
Phac1g00213 428 PRINTS Tubby superfamily signature 246 273 IPR000007 -
Phac1g00213 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Phac1g00213 428 PRINTS Tubby superfamily signature 181 197 IPR000007 -
Phac1g00213 428 PRINTS Tubby superfamily signature 338 355 IPR000007 -
Phac1g00213 428 ProSitePatterns Tub family signature 1. 356 369 IPR018066 -
Phac1g00213 428 Pfam F-box domain 65 112 IPR001810 GO:0005515
Phac1g00213 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Phac1g00213 428 CDD F-box_AtTLP-like 65 109 - -
Phac1g00213 428 SUPERFAMILY F-box domain 56 109 IPR036047 GO:0005515
Phac1g00213 428 Pfam Tub family 126 423 IPR000007 -
Phac1g00213 428 SUPERFAMILY Tubby C-terminal domain-like 114 428 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00213 Phac-Chr1 1411109 1417468 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phac1g00213 Tub 2.7e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g00213 1 1411109 1417468 Phac1g00213 1 1411109 1417468 ECH