Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02618 ATGAGTCCTCCAGCTGAATCCAACATGAGGGAAGATGGCAAGCCAGAAAATGCCACAGACCAAGTTGTGTCTCGCTTCGTAGAGTTCCTCAAGAATGAATTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAATCGATTTGCTAGGAGAAACCAAACATATTCTTCTGACAAATTTTTCATCAATGGGGAATGGAACGGCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTCATACTCTGTCAAGAAATTGATCCACAACAATGAGGAGGCTGGGAAGGAAGAGAATGCGATCACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAGCTAAGCTCAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTGAGTAATCTATATGGAACAGATTGGGAAAACAAGCTGGAGGCAAAGGAGATACATGCCAATGCTATTCATTTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGACAACTGACTCAAATGCCGAAAGGAACTCATCTGTGATTGTTCATGCATCTGAATACCATCGATTTGGATGGTTGCTTTTCTTGGCTCTTCGTGTTCATGCTTTCAGCCGCTTCAAAGACTTGGTGACTTGCACCAATGGTCTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGATTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAATAATAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATACAACACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCCTGCTTGGCATCTGAATGCGAAACTGAAAACCTAGAAAATATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCTTCTCTACCTTCTAGTTTAAATTTATTAGAAAAAGATTATGATTACATGATTCGCACCAAGAGTGAACTAGATGAGAGGTTATTCATTAATGAGGATGACAGCCTGTTAGCTTCAGGAAGCTTGTCTGGAGGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCACTGGCATCACCTGTTAAGACCATTACAAGTCCACTATCACCTCACCGCTCTCCCTCGTCACATCCTAATGGCATCCCAGGTAGCGGGAACTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACCGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCACCGAAACCCTCTCCAGAGCTGGAACGATTTCTGACATCATGTGATAGGGATGTTACAAGTGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTACATTTCCTAGTAGTCCACTTGGAGAACTATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTATTGGAGGCAATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCCCTCTTCTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTAACAATGTTGTTCCCTGCAGTACTTGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTGCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTCTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCCGCCCTTTCTGCTGAGATAAATCGCCTGGGACTGTTAGCTGAACCAATGCCATCATTGGACGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGACTGCCACCAGTGCCTACCTTGCCTAAGCTTGAAAGTTCACCAACTCAGAATGGGGATATCAGATCACCCAAGCGAAATGTATTGATGGAAAGAAATTCTCTAACTTCTCCTGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAACTACCCCCACCACCTTTGCAGTCTGCATTTTCCAGCCCAACAAAGCCAAATCCAGCAGGTGGAGGGGAAACGTGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATTAGTGGCATGGTCGAAAGACTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAACGGACATCTCTCTTTTTCAACCATCATATAGACCAGATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAATTAAACCTAACTTTTAGAGAGATAGTATACAACTATAGAAAGCAGCCACATTGCAAACCACAAGTTTTCCGCAGTGTATTTGTTGATTGGTCATTAGCACGCCGAAATGGGAGAACAGGACAGGAGCATGTTGACATCATCACCTTTTACAATGAAATATTTATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGACCCTTCTGGAGCAACTACAAAAAGCGACCGAATACCTGAAGTTAATAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGATCTCCTAAAATATCATCTTTCCCTACCCTTCCCGATATGTCTCCAAAAAAAGTATCTGCTACACACAATGTATATGTCTCTCCATTACGATCGTCCAAGATGGATGCTCTAATATCACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGGAAGGTGAGAGGACCCCTGAATTTTGATGATGTTGATGTGGGCTTGGTTAGTGATTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGACTCTTAA 3039 0.4192 MSPPAESNMREDGKPENATDQVVSRFVEFLKNELALEEKSCKEAIDLLGETKHILLTNFSSMGNGTAEEAERYWFAFISYSVKKLIHNNEEAGKEENAITGLSLCRILRAAKLNIADFFKELPQFVVKAGPTLSNLYGTDWENKLEAKEIHANAIHLKILSKYYKRVFGEFFVTTDSNAERNSSVIVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKNNKGVDLLASLCNIYNTTEDELRKTMEKANNVIADILKKKPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLNLLEKDYDYMIRTKSELDERLFINEDDSLLASGSLSGGSVSAGGVKRKFDSLASPVKTITSPLSPHRSPSSHPNGIPGSGNSKMAATPVSTAMTTAKWLRTVISPLAPKPSPELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVFHATNLTPLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSCGGLPPVPTLPKLESSPTQNGDIRSPKRNVLMERNSLTSPVKDRLLPFSNLKSKLPPPPLQSAFSSPTKPNPAGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQRTSLFFNHHIDQIILCCFYGVAKISQLNLTFREIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQEHVDIITFYNEIFIPSVKPLLVELDPSGATTKSDRIPEVNNKNDGHLAQCPGSPKISSFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02618 1012 FunFam Retinoblastoma-related protein 1 683 895 - -
Phac11g02618 1012 SUPERFAMILY Cyclin-like 730 869 IPR036915 -
Phac11g02618 1012 MobiDBLite consensus disorder prediction 384 413 - -
Phac11g02618 1012 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1010 IPR028309 GO:0006357|GO:0051726
Phac11g02618 1012 Pfam Retinoblastoma-associated protein B domain 732 859 IPR002719 GO:0005634|GO:0051726
Phac11g02618 1012 FunFam Retinoblastoma-related protein 1 192 350 - -
Phac11g02618 1012 Pfam Retinoblastoma-associated protein A domain 413 614 IPR002720 GO:0005634|GO:0051726
Phac11g02618 1012 Pfam Domain of unknown function (DUF3452) 101 231 IPR024599 -
Phac11g02618 1012 Coils Coil 27 47 - -
Phac11g02618 1012 Coils Coil 269 289 - -
Phac11g02618 1012 Gene3D - 696 882 - -
Phac11g02618 1012 SMART DUF3452_2 83 231 IPR024599 -
Phac11g02618 1012 MobiDBLite consensus disorder prediction 701 723 - -
Phac11g02618 1012 SUPERFAMILY Cyclin-like 421 616 IPR036915 -
Phac11g02618 1012 Gene3D - 416 604 - -
Phac11g02618 1012 SMART RB_A_2 413 614 IPR002720 GO:0005634|GO:0051726
Phac11g02618 1012 FunFam Retinoblastoma-related protein 1 416 604 - -
Phac11g02618 1012 CDD CYCLIN_AtRBR_like 732 863 - -
Phac11g02618 1012 Gene3D - 192 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02618 Phac-Chr11 36923512 36931698 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Phac11g02618 RB_A 5.1e-64 CL0065