Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3885 ATGGTAGGTTCGACACATAACGGAGGGGGAGATAGCGGTAAGTCATTGATGGAAGACCTCCTCGGACTTCTAAGGATCCGCATTAAGCGTGGCGTCAACCTCGCCGTTCGTGATGTTAATACTAGTGATCCATATGCCGTCGTTAAGATGGGCAAGCAGAGACTCAAGACTCATGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACACTATCTATCACAGATCCCGTTGTTCCATTCAAACTGACTGTGTATGACTATGACACATTTAGCAAAGATGACAAAATGGGAGATGCTGAGTTTGACCTCTCACCATATATAGAGGCCTTAAAGACGAACTTAGAAGGCCTCCCAGAAGGTACTATAATCACGAGAATACAGCCGTGCAGACAAAACTGCTTGTCAGAGGAGAGTTGCATCACTTATTCCGATGGCAAAGTTGTCCAAGATGTTGTCCTTAGATTGAGAAATGTTGAATGTGGTGAAGTGGAAATTCAATTGCAATGGATCGATCTTCCCGGTGCCAAGGGTTTATATTAG 549 0.439 MVGSTHNGGGDSGKSLMEDLLGLLRIRIKRGVNLAVRDVNTSDPYAVVKMGKQRLKTHVIKKDVNPEWNEDLTLSITDPVVPFKLTVYDYDTFSKDDKMGDAEFDLSPYIEALKTNLEGLPEGTIITRIQPCRQNCLSEESCITYSDGKVVQDVVLRLRNVECGEVEIQLQWIDLPGAKGLY* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3885 182 CDD C2_ArfGAP 21 164 - -
Mtr8g3885 182 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 20 107 IPR035892 -
Mtr8g3885 182 Pfam C2 domain 22 108 IPR000008 -
Mtr8g3885 182 Gene3D C2 domain 18 179 IPR035892 -
Mtr8g3885 182 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 11 180 - -
Mtr8g3885 182 SMART C2_3c 23 118 IPR000008 -
Mtr8g3885 182 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 11 180 IPR044562 -
Mtr8g3885 182 ProSiteProfiles C2 domain profile. 8 119 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3885 Mtr-Chr8 49482740 49483885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3885 54 181 C2H2 Transcription Factor Family AT1G70790 57.692 1.08e-50 158
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3885 8 49482740 49483885 Mtr6g1812 6 33009083 33011669 PCT