Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3762 ATGGCGACGCCATTGGACGGAGGAGGAGGAGTGGCGTTGCTCTCGAACTCCGCCGCGAACAAAGTCGATTCCTCTTCGACTATCAATGGCGGTTTGAAGTGTTCCAAACTCGATTCACCGATTTTGATTTTCTTGTTCTTTCATAAAGCGATTCGGAATGAGCTTGACGTTTTACATCGATTAGCCATGTCATTCGCCACCGGTAATCGCTCTGATATTCGTCCTCTCTTCGACCGTTATCATTTCCTCAACTCTATTTATCGTCATCACTCCAATGCTGAAGATGAGGTGATCTTTCCTGCTCTAGACAGACGTGTGAAGAATGTAGCACAAACTTATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTCTTAAATTCTTCCACCAAGAATGATGAGGGTTTTCCAAGAGAATTGGCATCTTGCACAGGAGCTTTACAGACATCAGTTAGTCAACACCTGGCAAAGGAAGAGGAACAGGTATTTCCTCTACTTATCGAGAAGTTCTCTCTTGAGGAACAAGCATCCTTAGTTTGGCAGTTTCTTTGTAGTATTCCAGTGAATATGATTGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCAGCTGATGAATCTCAGGATTTACGAGATTTCTTAATCAAGATTGTGCCCGAGGAAAGGCTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAAGTAGTGTTAGCAGAAGTCAAAGTAGTGCTAACACAATTCAAAGTTGTGCAGATCATTCTCAAGTTCAATGTTGTTCTAGTCCATTAACCCATCAGGTTGGAAGAGTAAATTGTATATGCGAGTCCACAACTACTGGAAAAAGGAAACATTCTGGATCTATGCTAGATGTTTCTGATGCCACTGGAACACATCCAATAGATGAGATATTACTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAAACCAGGAGGATACAACACTCTGGAGATTTTACTGATATATCAGCTTTTAATGACAGATTGCAATTCATTGCCGACGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTTATTTTTCCCGCGGTAGATGGAGAACTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAGTTTAATGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGAAGGAGCATCGTCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACCATTCAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGACAATGTGAACTTCTCTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAAAGAGTCCTACCATGGTTGGTAGGATCTTTAAAGGTAGAAGAAGCAAAAATGTTCCTGAGAAATATGCAATTTGCAGCTCCAGCAACAGATTCTGCTCTGGTCACACTCTTCAGTGGTTGGGCATGCAAGGCTCGTAATGAAGGCATGTGTTTGTCTTCAGGAACATCAGATTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGATCGGCCATCCAGTGTTTGTTCCTCCGCATCATCTCGAAGACATTGCTCGGTAATACTTGAGTCAGATGGCAACAAAAGACCAGTCAAGCGAAACACGTTTAAGTTGAACAATGGAGATGTAACTGAAATTTCAGAGACTGAAAGTATCCAGAAACAATGCTGTAGTCCTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAACAGTAACAATTTGAGGCTTAGTTCAATTTCAACAGCCAAGTCCTTGCGCTCCTTGTCTTTCAGCTCTTCTGCTCCATCTCTCAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCATGCGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGTAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTGAGTGATAGTGACGAGACCATTATTCGGCAATTTAGTGGAAGGTTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAACGCAGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCACAATGTGAGCCATTCATACATGTTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCTTCGTTCTTTCTGAGTTTTCTGTCCTTCATGAAGCCTTGCAGTTGACCCATATGGCAGACAATTTGAGTGATAGTAATTTTGGAACTTCTGACGTCAATGATGGTGATGATGTCAAGAAGTATAACGAACTTGCAACAAAGCTCCAGGGGATGTGTAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGAGAAGAGCGTGAACTCTGGCCATTGTTTGGGAAACATTTCTCTGTGGAAGAACAAGATAAGATAGTAGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAGTCAATGTTACCGTGGGTAACTTCCGCACTTACTCAGGATGAACAGAATAAAATGATGGATACATGGAAGCAGGCAACTAAGAATACCATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCAGAATCTATATCACAGACAGAAACATCACATTGTAGCACGTCTCATAGAGGTTCTGAGTATCAGGAATGCTTGGACTACAATGATCAAATGTTTAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCTAGGAGAAAGGCATATCTTGTGCAGAATCTTTTGACAAGTCGTTGGATAGCTGCCCAGCAGAAATCACCTAAACCTCCATCTGAAGGATCATCTAACGGGGTCAAAATAGAAGGACACTCACCATCATTTCGGGACCCAGGAGAACTTGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCATGCTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAACGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCAATTGGGCCTATATGCATGACACCTTCATGTAATGCACTTTCAATGGCAAAGTACTATTGCAGTATATGCAAATTTTTCGATGATGAAAGGAATGTATACCATTGCCCATTTTGCAATTTATGCCGTGTTGGACAAGGGCTTGGGATTGATTATTTTCATTGCATGAAATGCAATTGCTGCCTGGGGATTAAGTCGTTATCTCATAAGTGCCTGGAGAAAGGTTTAGAGATGAATTGCCCAATTTGCTGTGACGACTTATTCACGTCAAGTGCTACAGTCAGAGCTCTGCCTTGTGGCCACTACATGCATTCTGCTTGCTTTCAGGCATACACTCGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCTTATTGGCTGCGGAGGAGCTCCCTGAAGAGTATAGGGACCGTCATCAGGACATCCTTTGTAATGACTGTGATCGAAAGGGCACTTCACGCTTCCACTGGCTGTATCACAAATGTGGATCTTGTGGCTCTTACAATACCCGGCTGATCAAGCGTGAGACCCATTCCAGCTGCTCTTAG 3732 0.4159 MATPLDGGGGVALLSNSAANKVDSSSTINGGLKCSKLDSPILIFLFFHKAIRNELDVLHRLAMSFATGNRSDIRPLFDRYHFLNSIYRHHSNAEDEVIFPALDRRVKNVAQTYSLEHKGESNLFDHLFELLNSSTKNDEGFPRELASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMIAEFLPWLSTSISADESQDLRDFLIKIVPEERLLQKVVFTWMEGRSSVSRSQSSANTIQSCADHSQVQCCSSPLTHQVGRVNCICESTTTGKRKHSGSMLDVSDATGTHPIDEILLWHNAIKKELSEIAVETRRIQHSGDFTDISAFNDRLQFIADVCIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNDFRCLIESILSEGASSNSEVEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLKVEEAKMFLRNMQFAAPATDSALVTLFSGWACKARNEGMCLSSGTSDCCPAQRLSDIEENIDRPSSVCSSASSRRHCSVILESDGNKRPVKRNTFKLNNGDVTEISETESIQKQCCSPRSCCVPGLGVNSNNLRLSSISTAKSLRSLSFSSSAPSLNSSLFIWETESSSCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDSDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISFVLSEFSVLHEALQLTHMADNLSDSNFGTSDVNDGDDVKKYNELATKLQGMCKSIRVTLDQHIFREERELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPESISQTETSHCSTSHRGSEYQECLDYNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKPPSEGSSNGVKIEGHSPSFRDPGELVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPICMTPSCNALSMAKYYCSICKFFDDERNVYHCPFCNLCRVGQGLGIDYFHCMKCNCCLGIKSLSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTRSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRHQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRLIKRETHSSCS* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3762 1243 ProSiteProfiles Zinc finger CTCHY-type profile. 1064 1127 IPR017921 -
Mtr8g3762 1243 PANTHER CHY ZINC FINGER PROTEIN 27 1242 - -
Mtr8g3762 1243 Gene3D nmb1532 protein domain like 648 889 - -
Mtr8g3762 1243 CDD Hr-like 43 169 - -
Mtr8g3762 1243 Pfam CHY zinc finger 999 1074 IPR008913 GO:0008270
Mtr8g3762 1243 MobiDBLite consensus disorder prediction 963 987 - -
Mtr8g3762 1243 CDD Hr-like 654 814 - -
Mtr8g3762 1243 ProSiteProfiles Zinc finger RING-type profile. 1128 1170 IPR001841 -
Mtr8g3762 1243 SUPERFAMILY Zinc hairpin stack 1065 1120 IPR037275 -
Mtr8g3762 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1123 1172 IPR013083 -
Mtr8g3762 1243 Pfam Hemerythrin HHE cation binding domain 304 438 IPR012312 -
Mtr8g3762 1243 Pfam Hemerythrin HHE cation binding domain 652 815 IPR012312 -
Mtr8g3762 1243 Pfam Hemerythrin HHE cation binding domain 45 171 IPR012312 -
Mtr8g3762 1243 CDD Hr-like 307 436 - -
Mtr8g3762 1243 SMART ring_2 1128 1169 IPR001841 -
Mtr8g3762 1243 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 27 1242 - -
Mtr8g3762 1243 CDD RING-H2_Pirh2 1127 1170 - -
Mtr8g3762 1243 Pfam Ring finger domain 1127 1169 IPR001841 -
Mtr8g3762 1243 Gene3D - 1199 1240 - -
Mtr8g3762 1243 MobiDBLite consensus disorder prediction 963 983 - -
Mtr8g3762 1243 Pfam Zinc-ribbon 1175 1232 IPR039512 -
Mtr8g3762 1243 Gene3D nmb1532 protein domain like 307 454 - -
Mtr8g3762 1243 Gene3D nmb1532 protein domain like 37 189 - -
Mtr8g3762 1243 SUPERFAMILY CHY zinc finger-like 995 1055 IPR037274 GO:0008270
Mtr8g3762 1243 ProSiteProfiles Zinc finger CHY-type profile. 992 1061 IPR008913 GO:0008270
Mtr8g3762 1243 SUPERFAMILY RING/U-box 1125 1180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3762 Mtr-Chr8 48114391 48127800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3762 1 1238 C2H2 Transcription Factor Family AT3G18290 67.169 0.0 1689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3762 8 48114391 48127800 Mtr8g3762 8 48114391 48127800 ECH