Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3750 ATGATTATAGACATGAAAGGTGATGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTCCTTTGTCATGGTTGTGACAATTTGGTTCACTCTGCAAATCTATTAGCAAGTAGACACGAAAGGGTTCGCCTTCAAACCGCGTCTGCTAAGGTAACAACAACAGCACAAGCATGGCACAGTGGATTCACAAGGAAAGCAAGAACTCCCCGCCACAACAAAAATTCGTCGATTCAACAACAACAGCAACGTCTCAAGGAAAAAGTTCTCTTCAATACTAGTTTTCTTCCACTTGTTCCTGAACTCGGAGGTGAAGAAGAACAAGGACAAGAACTACTTGTTGATATTGATGAGGCTGATGAGGAGCAGTTGCTGTGTCGTGTGCCAGTTTTCGATGCCAACCCTTTTGATTTAGAGACTTGTACTGTGAAAAATGATGCTGTTGATTTTGAGGAAATGTGTGACTTGGATAGTTTCTGTGAGTTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGTTTACTTGGTGTTGGGAGTAGTGAGATTCAAGAGAATTCATCAGGACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATGCATCCAAAAGTGAAATGTTAAAGGTTAAGGATGAAGAACTTGATGATTTGGAATCAGTTTTTGACATGACAAGTGATGATGTTTTTCATTGGAATATTGATAATAATGATGTATCACTAGCACAACAAGAGAAAGAGTATATGCCTTTGAGTAATAGTAGTGTTGGTTATAGTGAGAGCGTTATTACTAAAGAAGAAACAAAGAGAGAGAGATTTTTGAGACTAAACTATGAAGAGGTTATTACTGAATGGAGCAGGCAAGGTTCTCCTTCTCCATGGACTACTGCAAACCCTCCTAAGTTCAATTGTGATGATGATTCATGGCAAAACTTATTGGGTTCAAGTGGTGTAGAAGGAGAAGTAAGAAGCTTAAGGGGGCAATTAATGGGAAGTGGTGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGGACAGCATGTTTTGCTGGAGGAGCAACTTCTTTTCCAACTAATTACCACTGA 1251 0.3941 MIIDMKGDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANLLASRHERVRLQTASAKVTTTAQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGEEEQGQELLVDIDEADEEQLLCRVPVFDANPFDLETCTVKNDAVDFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSSEIQENSSGQVFDYKQENEMDASKSEMLKVKDEELDDLESVFDMTSDDVFHWNIDNNDVSLAQQEKEYMPLSNSSVGYSESVITKEETKRERFLRLNYEEVITEWSRQGSPSPWTTANPPKFNCDDDSWQNLLGSSGVEGEVRSLRGQLMGSGGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTACFAGGATSFPTNYH* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3750 416 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Mtr8g3750 416 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 7 406 - -
Mtr8g3750 416 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Mtr8g3750 416 SMART bboxneu5 17 64 IPR000315 GO:0008270
Mtr8g3750 416 CDD Bbox1_BBX-like 21 64 - -
Mtr8g3750 416 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 7 406 - -
Mtr8g3750 416 Pfam B-box zinc finger 19 62 IPR000315 GO:0008270
Mtr8g3750 416 Pfam CCT motif 358 400 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3750 Mtr-Chr8 48000823 48002790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3750 11 400 C2C2-CO-like Transcription Factor Family AT1G25440 43.764 5.68e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr8g3750 zf-B_box 4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3750 8 48000823 48002790 Mtr8g3750 8 48000823 48002790 ECH